Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007786.1 Corchorus capsularis cultivar CVL-1 contig07807, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47808

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
144--925
326
2.4
327
88
3
1142
34
17
15
32
1.92
1558--1720
60
2.7
60
92
1
265
35
19
19
25
1.95
1554--1722
31
5.6
31
66
17
113
34
19
18
26
1.95
1752--1916
31
5.5
31
70
13
137
29
20
16
33
1.95
1752--1912
60
2.7
60
92
1
270
28
19
16
34
1.94
1780--1881
29
3.5
28
70
12
80
32
19
14
33
1.92
1992--2325
54
6.2
53
80
4
341
35
24
30
10
1.88
1992--2323
160
2.1
160
82
3
389
34
24
30
10
1.89
2338--2506
53
3.2
54
76
7
150
37
26
26
10
1.88
2520--2699
54
3.4
54
75
6
174
38
23
28
9
1.86
31896--31953
3
19.3
3
96
0
107
63
0
0
36
0.94
32038--32063
2
13.0
2
100
0
52
50
0
0
50
1.00
32187--32213
13
2.1
13
100
0
54
14
7
29
48
1.71
38079--38136
27
2.1
27
93
0
98
8
24
8
58
1.56
38082--38128
13
3.5
13
77
5
58
10
23
6
59
1.53
47004--47051
23
2.0
24
88
4
71
18
16
37
27
1.92

Tables:   1

The End!