Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007787.1 Corchorus capsularis cultivar CVL-1 contig07808, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70407

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1056--1122
31
2.2
32
86
5
93
32
14
4
47
1.65
1349--1578
22
10.5
22
72
12
152
41
10
14
33
1.79
1743--2258
22
23.7
22
68
14
167
39
9
13
36
1.78
1890--1974
23
3.7
23
82
4
93
42
7
12
37
1.71
1890--1994
45
2.3
45
80
6
115
41
9
11
37
1.74
2162--2200
20
2.0
20
89
0
60
53
2
10
33
1.48
3030--3070
3
13.7
3
100
0
82
65
0
34
0
0.93
6371--6395
1
25.0
1
100
0
50
100
0
0
0
0.00
20623--20652
7
4.3
7
100
0
60
53
33
0
13
1.40
21038--21092
28
2.0
28
89
10
87
50
10
10
27
1.70
27372--27539
83
2.0
83
98
0
327
44
14
19
21
1.86
33419--33465
19
2.4
20
82
10
53
46
8
8
36
1.65
33822--33864
21
2.0
21
90
0
68
25
20
25
27
1.99
39202--39241
21
1.9
21
85
10
55
30
10
17
42
1.82
40599--40638
12
3.3
12
92
0
62
37
2
10
50
1.50
42519--42553
2
17.5
2
88
11
54
48
0
2
48
1.16
42512--42548
12
3.2
12
88
11
51
48
0
5
45
1.25
44969--45003
7
5.0
7
96
0
52
42
22
5
28
1.76
45309--45333
6
4.2
6
100
0
50
20
16
32
32
1.94
49262--49286
6
4.2
6
100
0
50
16
16
16
52
1.76
60024--60050
2
13.5
2
100
0
54
48
0
0
51
1.00

Tables:   1

The End!