Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01007788.1 Corchorus capsularis cultivar CVL-1 contig07809, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23507
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.34
Found at i:8064 original size:15 final size:15
Alignment explanation
Indices: 8044--8074 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8034 TCAGTAGGGG
*
8044 TTTTTTTATTTTTAT
1 TTTTTTTATTATTAT
8059 TTTTTTTATTATTAT
1 TTTTTTTATTATTAT
8074 T
1 T
8075 CTAGGTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTTTATTATTAT
Found at i:9729 original size:1 final size:1
Alignment explanation
Indices: 9719--9793 Score: 60
Period size: 1 Copynumber: 75.0 Consensus size: 1
9709 ACCGTATTTG
* * * * * * * * *
9719 TTTTTGTTTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTTTTTTTTTGTTTTTGT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
9784 TTTTTCTTTT
1 TTTTTTTTTT
9794 CATTTGTCTC
Statistics
Matches: 54, Mismatches: 20, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 54 1.00
ACGTcount: A:0.00, C:0.01, G:0.12, T:0.87
Consensus pattern (1 bp):
T
Found at i:9756 original size:32 final size:32
Alignment explanation
Indices: 9715--9787 Score: 121
Period size: 32 Copynumber: 2.3 Consensus size: 32
9705 CAACACCGTA
9715 TTTGTTTTTGTTTTTTTGTTTTTGTTTTTGTT
1 TTTGTTTTTGTTTTTTTGTTTTTGTTTTTGTT
*
9747 TTTGTTTTTGTTTTTGTT-TTTTTTTTTTTGTT
1 TTTGTTTTTGTTTTT-TTGTTTTTGTTTTTGTT
9779 TTTGTTTTT
1 TTTGTTTTT
9788 TCTTTTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
32 37 0.95
33 2 0.05
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (32 bp):
TTTGTTTTTGTTTTTTTGTTTTTGTTTTTGTT
Found at i:9757 original size:38 final size:38
Alignment explanation
Indices: 9715--9787 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
9705 CAACACCGTA
9715 TTTGTTTTTGTTTTTTTGTTTTTGTTTTTGTTTTTGTT
1 TTTGTTTTTGTTTTTTTGTTTTTGTTTTTGTTTTTGTT
*
9753 TTTGTTTTTGTTTTTTTTTTTTTGTTTTTGTTTTT
1 TTTGTTTTTGTTTTTTTGTTTTTGTTTTTGTTTTT
9788 TCTTTTCATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (38 bp):
TTTGTTTTTGTTTTTTTGTTTTTGTTTTTGTTTTTGTT
Found at i:9793 original size:6 final size:6
Alignment explanation
Indices: 9715--9787 Score: 101
Period size: 6 Copynumber: 11.5 Consensus size: 6
9705 CAACACCGTA
9715 TTTGTT TTTGTTTT TTTGTT TTTGTT TTTGTT TTTGTT TTTGTT TTTGTTTT
1 TTTGTT TTTG--TT TTTGTT TTTGTT TTTGTT TTTGTT TTTGTT TTTG--TT
*
9767 TTTTTT TTTGTT TTTGTT TTT
1 TTTGTT TTTGTT TTTGTT TTT
9788 TCTTTTCATT
Statistics
Matches: 61, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
6 50 0.82
8 11 0.18
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (6 bp):
TTTGTT
Found at i:11403 original size:47 final size:47
Alignment explanation
Indices: 11338--11434 Score: 185
Period size: 47 Copynumber: 2.1 Consensus size: 47
11328 GTGTAAAGTT
11338 TAAGACTTGGAAGTAATCTCTTCAATCTTCATTTTCTTTCTGAAAAG
1 TAAGACTTGGAAGTAATCTCTTCAATCTTCATTTTCTTTCTGAAAAG
*
11385 TAAGACTTGGAAGTAATCTCTTCAATCTTCATTTTCTTTGTGAAAAG
1 TAAGACTTGGAAGTAATCTCTTCAATCTTCATTTTCTTTCTGAAAAG
11432 TAA
1 TAA
11435 AGGACTGCAT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.40
Consensus pattern (47 bp):
TAAGACTTGGAAGTAATCTCTTCAATCTTCATTTTCTTTCTGAAAAG
Found at i:19020 original size:332 final size:333
Alignment explanation
Indices: 18307--19685 Score: 2066
Period size: 333 Copynumber: 4.1 Consensus size: 333
18297 TTCTTCACAA
* * * * **
18307 ATCTATATTCATCTAACTAAATTTCAGCCACAGTGAATTTAAGGATTTGATTTGGTGAGCATCAG
1 ATCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGATTTGACGAGCATCAG
*
18372 AATCATGTTTCGATTTAATGAGAAATTAATTCAGAAAAATATAGGAAAATCGATATTAGAAGCGT
66 AATCATGTGTCGATTTAATGAGAAATTAATTCAGAAAAATATAGGAAAATCGATATTAGAAGCGT
* **
18437 GAAAAGCTCATCAATCTTTTTTGCGTTGAATTATATATTTTTTATGAGTATAATGGCCAAAAATT
131 GAAAAGCCCATCAATCTTTTTTGCGTTGAATTATATATTTTTTATGAGTATTCTGGCCAAAAATT
* * *
18502 GAGGAAAAATTTTTCGGGTCAATTTTTGTAAAATTTTAGCTCAAATCGTCTACTAACCATCACGG
196 GAGGAAAAATTTTTCGGGTCAATTTTTGCAAAATTTTAGCCCAAATCGTGTACTAACCATCACGG
* * **
18567 TTTTTAGCTAAAAATGCGTTCCGGTGCTCTGGGTCAGTTTTGCATGATTTTTTGTGCCAAGACTC
261 TTTTTAGCTAAAAATGCGTTCCGGTGCTCCGGTTCAGTTTTGCATGATTTTTTGCACCAAGACTC
18632 ATTGAAAT
326 ATTGAAAT
18640 ATCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGATTTGACGAGCATCAG
1 ATCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGATTTGACGAGCATCAG
* * *
18705 AATCATGTCTCGATTTAATGAGAAATTAATTCGGAAAGATATAGGAAAATCGATATTAGAAGCGT
66 AATCATGTGTCGATTTAATGAGAAATTAATTCAGAAAAATATAGGAAAATCGATATTAGAAGCGT
* * *
18770 GAAAAGCCCATCGATCTTTTTAG-GATTGAGTTATATA-TTTTTATGAGTATTCTGGCCAAAAAT
131 GAAAAGCCCATCAATCTTTTTTGCG-TTGAATTATATATTTTTTATGAGTATTCTGGCCAAAAAT
* * * * * *
18833 TGTGAAAAAAACTTTTCGGGTCAATTTTTGCAAAATTTTAACCCAAATC-TATACAAACCATCAC
195 TGAG-GAAAAATTTTTCGGGTCAATTTTTGCAAAATTTTAGCCCAAATCGTGTACTAACCATCAC
* * * *
18897 GGTTTTTAGCTAAAAATACGTTCCGGTGCTACGGTTCAGTTTTGCATGATTTTTTGCGCCAATAC
259 GGTTTTTAGCTAAAAATGCGTTCCGGTGCTCCGGTTCAGTTTTGCATGATTTTTTGCACCAAGAC
*
18962 TCACTGAAAT
324 TCATTGAAAT
*
18972 ATCTATATTCATCTCACCAAATCTCAGCCACAATGGATTTAAGGATTTGATTTGACGAGCATCAG
1 ATCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGATTTGACGAGCATCAG
*
19037 AATCATGTGTCGATTTAATGAGAAATTAATTCGGAAAAATATAGGAAAATCGATATTAGAAGCGT
66 AATCATGTGTCGATTTAATGAGAAATTAATTCAGAAAAATATAGGAAAATCGATATTAGAAGCGT
* * *
19102 GAAAAGCCCATCAATATTTTTGGCGTTGAATTATATATTTTCTATGAGTATTCTGGCCAAAAATT
131 GAAAAGCCCATCAATCTTTTTTGCGTTGAATTATATATTTTTTATGAGTATTCTGGCCAAAAATT
* *
19167 GAGGAAAAATTTTTCGGGTCAATTTTTGCAAAATTTTAGCTCAAATCGTGTACTAACCATCATGG
196 GAGGAAAAATTTTTCGGGTCAATTTTTGCAAAATTTTAGCCCAAATCGTGTACTAACCATCACGG
* * * * *
19232 TTTCTGGCTAAAAATGCGTTCCGGTGCTCCGGTTCAGTTTTACAGGATTTTTTTCACCAAGACTC
261 TTTTTAGCTAAAAATGCGTTCCGGTGCTCCGGTTCAGTTTTGCATGATTTTTTGCACCAAGACTC
*
19297 GTTGAAAT
326 ATTGAAAT
* * * * *
19305 ATTTATATTCATCTAACCAAATTTCGGCTACAATGGATTTAAGGATTTGATTTGACGAGCATTAG
1 ATCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGATTTGACGAGCATCAG
* *
19370 AATCATGTGTCAATTTAATGAGAAATTAATTCA-AGAAAATATAGGAAAATCAATATTAGAAGCG
66 AATCATGTGTCGATTTAATGAGAAATTAATTCAGA-AAAATATAGGAAAATCGATATTAGAAGCG
* * * *
19434 TGAAAAGCCCATTAATCTTTTTTGCGTTGAATTATATATTTTTTTTGAGTATTCTAGCGAAAAAT
130 TGAAAAGCCCATCAATCTTTTTTGCGTTGAATTATATATTTTTTATGAGTATTCTGGCCAAAAAT
* * * *
19499 TGAGGAAAAATTTTTCGAGTCAATTTTT-CTATAATTTTAGCCCAAATCGTGTACTAGCAATCAC
195 TGAGGAAAAATTTTTCGGGTCAATTTTTGC-AAAATTTTAGCCCAAATCGTGTACTAACCATCAC
* * * *
19563 GGTTTTTGGCTAAAAATGCGTTCCGATACTCCGGTTCAGTTTTGCATGATTTTTTGCACAAAGAC
259 GGTTTTTAGCTAAAAATGCGTTCCGGTGCTCCGGTTCAGTTTTGCATGATTTTTTGCACCAAGAC
19628 TCATTGAAAT
324 TCATTGAAAT
* * *
19638 ATCTATATTCATCTAAACAAATCCCAGCCACAATAGATTTAAGGATTT
1 ATCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTT
19686 AACCAAATCG
Statistics
Matches: 945, Mismatches: 94, Indels: 14
0.90 0.09 0.01
Matches are distributed among these distances:
332 309 0.33
333 636 0.67
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (333 bp):
ATCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGATTTGACGAGCATCAG
AATCATGTGTCGATTTAATGAGAAATTAATTCAGAAAAATATAGGAAAATCGATATTAGAAGCGT
GAAAAGCCCATCAATCTTTTTTGCGTTGAATTATATATTTTTTATGAGTATTCTGGCCAAAAATT
GAGGAAAAATTTTTCGGGTCAATTTTTGCAAAATTTTAGCCCAAATCGTGTACTAACCATCACGG
TTTTTAGCTAAAAATGCGTTCCGGTGCTCCGGTTCAGTTTTGCATGATTTTTTGCACCAAGACTC
ATTGAAAT
Found at i:19440 original size:665 final size:666
Alignment explanation
Indices: 18307--19685 Score: 2095
Period size: 665 Copynumber: 2.1 Consensus size: 666
18297 TTCTTCACAA
* * * * **
18307 ATCTATATTCATCTAACTAAATTTCAGCCACAGTGAATTTAAGGATTTGATTTGGTGAGCATCAG
1 ATCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGATTTGACGAGCATCAG
*
18372 AATCATGTTTCGATTTAATGAGAAATTAATTCAGAAAAATATAGGAAAATCGATATTAGAAGCGT
66 AATCATGTGTCGATTTAATGAGAAATTAATTCAGAAAAATATAGGAAAATCGATATTAGAAGCGT
* * * *
18437 GAAAAGCTCATCAATCTTTTTTGCGTTGAATTATATATTTTTTATGAGTATAATGGCCAAAAATT
131 GAAAAGCCCATCAATATTTTTGGCGTTGAATTATATATTTTCTATGAGTATAATGGCCAAAAATT
*
18502 GAGGAAAAATTTTTCGGGTCAATTTTTGTAAAATTTTAGCTCAAATCGTCTACTAACCATCACGG
196 GAGGAAAAATTTTTCGGGTCAATTTTTGCAAAATTTTAGCTCAAATCGTCTACTAACCATCACGG
* * * * *
18567 TTTTTAGCTAAAAATGCGTTCCGGTGCTCTGGGTCAGTTTTGCATGATTTTTTGTGCCAAGACTC
261 TTTCTAGCTAAAAATGCGTTCCGGTGCTCCGGGTCAGTTTTACAGGATTTTTTGTACCAAGACTC
18632 ATTGAAATATCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGATTTGACG
326 ATTGAAATATCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGATTTGACG
* * *
18697 AGCATCAGAATCATGTCTCGATTTAATGAGAAATTAATTCGGAAAGATATAGGAAAATCGATATT
391 AGCATCAGAATCATGTCTCAATTTAATGAGAAATTAATTCAGAAAGATATAGGAAAATCAATATT
* * *
18762 AGAAGCGTGAAAAGCCCATCGATCTTTTTAG-GATTGAGTTATATA-TTTTTATGAGTATTCTGG
456 AGAAGCGTGAAAAGCCCATCAATCTTTTTAGCG-TTGAATTATATATTTTTTATGAGTATTCTAG
* *
18825 CCAAAAATTGTGAAAAAAACTTTTCGGGTCAATTTTTGC-AAAATTTTAACCCAAATC-TATACA
520 CCAAAAATTGAG-AAAAAACTTTTCGAGTCAATTTTT-CTAAAATTTTAACCCAAATCGTATACA
* * *
18888 AACCATCACGGTTTTTAGCTAAAAATACGTTCCGGTGCTACGGTTCAGTTTTGCATGATTTTTTG
583 AACAATCACGGTTTTTAGCTAAAAATACGTTCCGATACTACGGTTCAGTTTTGCATGATTTTTTG
* * *
18953 CGCCAATACTCACTGAAAT
648 CACAAAGACTCACTGAAAT
*
18972 ATCTATATTCATCTCACCAAATCTCAGCCACAATGGATTTAAGGATTTGATTTGACGAGCATCAG
1 ATCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGATTTGACGAGCATCAG
*
19037 AATCATGTGTCGATTTAATGAGAAATTAATTCGGAAAAATATAGGAAAATCGATATTAGAAGCGT
66 AATCATGTGTCGATTTAATGAGAAATTAATTCAGAAAAATATAGGAAAATCGATATTAGAAGCGT
**
19102 GAAAAGCCCATCAATATTTTTGGCGTTGAATTATATATTTTCTATGAGTATTCTGGCCAAAAATT
131 GAAAAGCCCATCAATATTTTTGGCGTTGAATTATATATTTTCTATGAGTATAATGGCCAAAAATT
* *
19167 GAGGAAAAATTTTTCGGGTCAATTTTTGCAAAATTTTAGCTCAAATCGTGTACTAACCATCATGG
196 GAGGAAAAATTTTTCGGGTCAATTTTTGCAAAATTTTAGCTCAAATCGTCTACTAACCATCACGG
* *
19232 TTTCTGGCTAAAAATGCGTTCCGGTGCTCCGGTTCAGTTTTACAGGATTTTTT-TCACCAAGACT
261 TTTCTAGCTAAAAATGCGTTCCGGTGCTCCGGGTCAGTTTTACAGGATTTTTTGT-ACCAAGACT
* * * * *
19296 CGTTGAAATATTTATATTCATCTAACCAAATTTCGGCTACAATGGATTTAAGGATTTGATTTGAC
325 CATTGAAATATCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGATTTGAC
* *
19361 GAGCATTAGAATCATGTGTCAATTTAATGAGAAATTAATTCAAGAAA-ATATAGGAAAATCAATA
390 GAGCATCAGAATCATGTCTCAATTTAATGAGAAATTAATTC-AGAAAGATATAGGAAAATCAATA
* * *
19425 TTAGAAGCGTGAAAAGCCCATTAATCTTTTTTGCGTTGAATTATATATTTTTTTTGAGTATTCTA
454 TTAGAAGCGTGAAAAGCCCATCAATCTTTTTAGCGTTGAATTATATATTTTTTATGAGTATTCTA
* * * * * * *
19490 GCGAAAAATTGAGGAAAAATTTTTCGAGTCAATTTTTCTATAATTTTAGCCCAAATCGTGTACTA
519 GCCAAAAATTGAGAAAAAACTTTTCGAGTCAATTTTTCTAAAATTTTAACCCAAATCGTATACAA
* * * *
19555 GCAATCACGGTTTTTGGCTAAAAATGCGTTCCGATACTCCGGTTCAGTTTTGCATGATTTTTTGC
584 ACAATCACGGTTTTTAGCTAAAAATACGTTCCGATACTACGGTTCAGTTTTGCATGATTTTTTGC
*
19620 ACAAAGACTCATTGAAAT
649 ACAAAGACTCACTGAAAT
* * *
19638 ATCTATATTCATCTAAACAAATCCCAGCCACAATAGATTTAAGGATTT
1 ATCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTT
19686 AACCAAATCG
Statistics
Matches: 643, Mismatches: 65, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
664 2 0.00
665 489 0.76
666 152 0.24
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (666 bp):
ATCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGATTTGACGAGCATCAG
AATCATGTGTCGATTTAATGAGAAATTAATTCAGAAAAATATAGGAAAATCGATATTAGAAGCGT
GAAAAGCCCATCAATATTTTTGGCGTTGAATTATATATTTTCTATGAGTATAATGGCCAAAAATT
GAGGAAAAATTTTTCGGGTCAATTTTTGCAAAATTTTAGCTCAAATCGTCTACTAACCATCACGG
TTTCTAGCTAAAAATGCGTTCCGGTGCTCCGGGTCAGTTTTACAGGATTTTTTGTACCAAGACTC
ATTGAAATATCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGATTTGACG
AGCATCAGAATCATGTCTCAATTTAATGAGAAATTAATTCAGAAAGATATAGGAAAATCAATATT
AGAAGCGTGAAAAGCCCATCAATCTTTTTAGCGTTGAATTATATATTTTTTATGAGTATTCTAGC
CAAAAATTGAGAAAAAACTTTTCGAGTCAATTTTTCTAAAATTTTAACCCAAATCGTATACAAAC
AATCACGGTTTTTAGCTAAAAATACGTTCCGATACTACGGTTCAGTTTTGCATGATTTTTTGCAC
AAAGACTCACTGAAAT
Found at i:19821 original size:174 final size:174
Alignment explanation
Indices: 19531--19859 Score: 487
Period size: 174 Copynumber: 1.9 Consensus size: 174
19521 ATTTTTCTAT
* * *
19531 AATTTTAGCCCAAATCGTGTACTAGCAATCACGGTTTTTGGCTAAAAATGCGTTCCGATACTCCG
1 AATTTTAGCCAAAATCGTGTACTAACAATCACGGTTTTTGGCTAAAAATGCATTCCGATACTCCG
* *
19596 GTTCAGTTTTGCATGATTTTTTGCACAAAGACTCATTGAAATATCTATATTCATCTAAACAAATC
66 GTTCAGTTTTACATAATTTTTTGCACAAAGACTCATTGAAATATCTATATTCATCTAAACAAATC
*
19661 CCAGCCACAATAGATTTAAGGATTTAACCAAATCGTGTTTGCAA
131 CCAGCCACAATAGATTGAAGGATTTAACCAAATCGTGTTTGCAA
* * * * *
19705 AATTTTAGGCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGCATTCCGGTGCTCTG
1 AATTTTAGCCAAAATCGTGTACTAACAATCACGGTTTTTGGCTAAAAATGCATTCCGATACTCCG
* * * *
19770 GTTCAGTTTTACATAATTTTTTGCGCCAAGACTCATTGAAATATTTATATTCATCTAACCAAATC
66 GTTCAGTTTTACATAATTTTTTGCACAAAGACTCATTGAAATATCTATATTCATCTAAACAAATC
* * * *
19835 TCGGCCAGAATGGATTGAAGGATTT
131 CCAGCCACAATAGATTGAAGGATTT
19860 GATTTGACGA
Statistics
Matches: 136, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
174 136 1.00
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (174 bp):
AATTTTAGCCAAAATCGTGTACTAACAATCACGGTTTTTGGCTAAAAATGCATTCCGATACTCCG
GTTCAGTTTTACATAATTTTTTGCACAAAGACTCATTGAAATATCTATATTCATCTAAACAAATC
CCAGCCACAATAGATTGAAGGATTTAACCAAATCGTGTTTGCAA
Found at i:21979 original size:332 final size:332
Alignment explanation
Indices: 19698--22930 Score: 3998
Period size: 332 Copynumber: 9.9 Consensus size: 332
19688 CCAAATCGTG
* * **
19698 TTTGCAAAATTTTAGGCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGCATTCCGG
1 TTTGCAAAATTTTA-GCAAATTCGTGTACTAACCATCACGGTTTTTTGCTAAAAATGGGTTCCGG
* * * * * *
19763 TGCTCTGGTTCAGTTTTACATAATTTTTTGCGCCAAGACTCATTGAAATATTTATATTCATCTAA
65 TGATCCGGTTCAGTTTTGCATGATTTTTTGCGCCAAGACTCATTGAAATATCTACATTCATCTAA
* *
19828 CCAAATCTC-GGCCAGAATGGATTGAAGGATTTGATTTGACGAG----AGAATCATGTGTCGATT
130 CCAAATCTCAGG-CACAATGGATTTAAGGATTTGATTTGACGAGCATCAGAATCATGTGTCGATT
*
19888 TAATGAGAAATTAATTCGG-AAAATATAGGAAAATCGATATTAGAAGCGTGAAAAGCCCATCAAT
194 TAATGAGAAATTAATTCGGAAAAATATAGGAAAATCGATATTTGAAGCGTGAAAAGCCCATCAAT
* * * *
19952 ATTTTTGGCGCTGAATTATATATTTTTT-TGGAGTATTCTGGCCAAAAATTGAGGACA-AATTTT
259 CTTTTTGGCGTTGAATTATATATTTTTTAT-GAGTAGTCTGGCCAAAAATTGAAGA-ATAATTTT
20015 TCGGGTCAATT
322 TCGGGTCAATT
* * ***
20026 TTTGCAAAATTTTAGCCCAAA-TCGTGTACT-ACCATCACGGTTTTTGGATAAAAATGCACTCCG
1 TTTGCAAAATTTTAG--CAAATTCGTGTACTAACCATCACGGTTTTTTGCTAAAAATGGGTTCCG
* * *
20089 GTGCTCCGGTTCAGTTTTGCATGATGTTTTGCGCCAAGACTCATTGAAATATCTATATTCATCTA
64 GTGATCCGGTTCAGTTTTGCATGATTTTTTGCGCCAAGACTCATTGAAATATCTACATTCATCTA
* * ** * *
20154 ACCAAATCTCAGCCACAATGGAATTAAGGATTTGATTTGTGGAGCATCAGAATTATGTCTCGATT
129 ACCAAATCTCAGGCACAATGGATTTAAGGATTTGATTTGACGAGCATCAGAATCATGTGTCGATT
* * *
20219 TAATGAGAGATTAATTAGGAAAAATATAGGAAAATCGATATTAGAAGCGTGAAAAGCCCATCAAT
194 TAATGAGAAATTAATTCGGAAAAATATAGGAAAATCGATATTTGAAGCGTGAAAAGCCCATCAAT
* * * *
20284 -ATTTTGGCGCTGAATTATATATATTTTTATGGAGTATTCTGGCCAAAAATTGAGGACA-AATTT
259 CTTTTTGGCGTTGAATTATATAT-TTTTTAT-GAGTAGTCTGGCCAAAAATTGAAGA-ATAATTT
20347 TTCGGGTCAATT
321 TTCGGGTCAATT
* * * ** *
20359 TTTGCAAAATCTTAGCCATTTCGTGTACTAACCATCACAATTTTTTGGTAAAAATGGGTTCCGGT
1 TTTGCAAAATTTTAGCAAATTCGTGTACTAACCATCACGGTTTTTTGCTAAAAATGGGTTCCGGT
** **
20424 GATCCGGTTCAGTTTTGCATGA-TTTTTGCGCCTTG-CTTTTTGAAATATCTACATTCATCTAAC
66 GATCCGGTTCAGTTTTGCATGATTTTTTGCGCCAAGACTCATTGAAATATCTACATTCATCTAAC
* *
20487 CGAATCTCAGGCATAATGGATTT-AGGAATTTGATTTGACGAGCATCAGAATCATGTGTCGATTT
131 CAAATCTCAGGCACAATGGATTTAAGG-ATTTGATTTGACGAGCATCAGAATCATGTGTCGATTT
* * * *
20551 CATAAGAAATTAATTCGGAAAAATATAGGAAAATAGATATTAGAAGCGTGAAAAGCCCATCAATC
195 AATGAGAAATTAATTCGGAAAAATATAGGAAAATCGATATTTGAAGCGTGAAAAGCCCATCAATC
* * * * *
20616 TTCTTGGCGCTGAATTATATATTTTTTAGGAGTATTCTGGCCAAAAATTGAAGGGCA-AATTTTT
260 TTTTTGGCGTTGAATTATATATTTTTTATGAGTAGTCTGGCCAAAAATTGAA--GAATAATTTTT
20680 CGGGTCAATT
323 CGGGTCAATT
20690 TTTGCAAAATTTTAGC-----C-----C-AA--AT--C-G-----TG-TAAAAATGGGTTCCGGT
1 TTTGCAAAATTTTAGCAAATTCGTGTACTAACCATCACGGTTTTTTGCTAAAAATGGGTTCCGGT
* * * * *
20733 GATCCGGTTCAGTTTTGCATGATTTTTTGCGCCAAGACTCATTGAAATATTTATATACAACTATC
66 GATCCGGTTCAGTTTTGCATGATTTTTTGCGCCAAGACTCATTGAAATATCTACATTCATCTAAC
* * *
20798 AAAATCTCA-GCTGCAATGGATTTAAGGATTTGATTTGACGAGCATGAGAATCATGTGTCGATTT
131 CAAATCTCAGGC-ACAATGGATTTAAGGATTTGATTTGACGAGCATCAGAATCATGTGTCGATTT
*
20862 AATGAGAAATTAATTCGGAAAAATATA-G------GA-A----AA---T--AAAGCCTATCAATC
195 AATGAGAAATTAATTCGGAAAAATATAGGAAAATCGATATTTGAAGCGTGAAAAGCCCATCAATC
** * * *
20910 TTTTTCTCGTTAAATTATATATTTTTTATGAGTAGTCTGGCCAAAAATTGAAGAAAAACTTTTCG
260 TTTTTGGCGTTGAATTATATATTTTTTATGAGTAGTCTGGCCAAAAATTGAAGAATAATTTTTCG
*
20975 GTTCAATT
325 GGTCAATT
**** * * * **
20983 TTTGCAAAATTACCCCAAA-TCTTGCACTAACCATCACGGTTTTTGGCTAAAAATGCATTCCGGT
1 TTTGCAAAATTTTAGCAAATTCGTGTACTAACCATCACGGTTTTTTGCTAAAAATGGGTTCCGGT
* * * * *
21047 GCTCCAGTTCAGTTTTGCATGACTTTTTGCACCAAGACTCATTGAAATATCTATATTCATCTAAC
66 GATCCGGTTCAGTTTTGCATGATTTTTTGCGCCAAGACTCATTGAAATATCTACATTCATCTAAC
* ** * *
21112 AAAATCTCAACCACAATGGATTTAAGGATTTGATTTGACGAGCATGAGAATCATTTGTCGATTTA
131 CAAATCTCAGGCACAATGGATTTAAGGATTTGATTTGACGAGCATCAGAATCATGTGTCGATTTA
* * * * *
21177 ATGAGAAATGAATTCGTAAAAATATAGGAAAATCGATATTAGAAGCGTGGAAAGCCCATCAATTT
196 ATGAGAAATTAATTCGGAAAAATATAGGAAAATCGATATTTGAAGCGTGAAAAGCCCATCAATCT
* * * * * * *
21242 TTTTGGCGATGAATTATATATTTTTTAACGAGTATTCTAGCCGAAAATTG-AGGATAAATTTTCG
261 TTTTGGCGTTGAATTATATATTTTTT-ATGAGTAGTCTGGCCAAAAATTGAAGAATAATTTTTCG
21306 GGTCAATT
325 GGTCAATT
* * * *
21314 TTTACAAAATTTTAGCCATTTCGTGTACTAACCATCACGGTTTTATTGCTAGAAATGGGTTCCGG
1 TTTGCAAAATTTTAGCAAATTCGTGTACTAACCATCACGGTTTT-TTGCTAAAAATGGGTTCCGG
** * * *
21379 TGATCCGGTTCAGTTTTGCATGATTTTTTGCGCCTTGACTTATTGAAATATCAACATTCACCTAA
65 TGATCCGGTTCAGTTTTGCATGATTTTTTGCGCCAAGACTCATTGAAATATCTACATTCATCTAA
*
21444 CCAAATCTCAGGCACAATGGATTT-AGGAATTCGATTTGACGAGCATCAGAATCATGTGTCGATT
130 CCAAATCTCAGGCACAATGGATTTAAGG-ATTTGATTTGACGAGCATCAGAATCATGTGTCGATT
* * * *
21508 TCATGAGAAATTAATTCGGAAAAATATAGGAAATTGGATATTTGAAGCCTGAAAAGCCCATCAAT
194 TAATGAGAAATTAATTCGGAAAAATATAGGAAAATCGATATTTGAAGCGTGAAAAGCCCATCAAT
*
21573 CTTTTTGGCGTTGAATTATATATTTTTTATGAGTAGTCTGG-CAAAGAATTGAAGAATAAATTTT
259 CTTTTTGGCGTTGAATTATATATTTTTTATGAGTAGTCTGGCCAAA-AATTGAAGAATAATTTTT
21637 -GGGTTCAATT
323 CGGG-TCAATT
* * *
21647 TTTGCAAAATTTTAGCAAATTCGTGTACTAACCATTACGGTTTTTTCCTAAAACTGGGTTCCGGT
1 TTTGCAAAATTTTAGCAAATTCGTGTACTAACCATCACGGTTTTTTGCTAAAAATGGGTTCCGGT
** * * *
21712 GATCCGGTTCAGTTTTGCATGATTTTTTGCGCCTTGACTTATTGAAATATCTACATCCACCTAAC
66 GATCCGGTTCAGTTTTGCATGATTTTTTGCGCCAAGACTCATTGAAATATCTACATTCATCTAAC
* * * * *
21777 CAAATCTTAGGCACAATGGATTTAGGGATTTGATTTGACGAGCACCAAAATCATGTGTCGATTTC
131 CAAATCTCAGGCACAATGGATTTAAGGATTTGATTTGACGAGCATCAGAATCATGTGTCGATTTA
* * *
21842 ATGAGAAATTAATTCGGAAAAATATAGGAAAATGGATATTTTAAGCCTGAAAAGCCCATCAATCT
196 ATGAGAAATTAATTCGGAAAAATATAGGAAAATCGATATTTGAAGCGTGAAAAGCCCATCAATCT
* * * *
21907 TTTTGGCGTTGGATTATATATTTTTTATGAGTCGTCAGGCAAAAAATTGAAGAATAATTTTTCGG
261 TTTTGGCGTTGAATTATATATTTTTTATGAGTAGTCTGGCCAAAAATTGAAGAATAATTTTTCGG
21972 GTCAATT
326 GTCAATT
* * *
21979 TTTTCAAAATTTTAGCAAATTCGTGTACTAACCATTACGGTTTTTTGCTAGAAATGGGTTCCGGT
1 TTTGCAAAATTTTAGCAAATTCGTGTACTAACCATCACGGTTTTTTGCTAAAAATGGGTTCCGGT
** * *
22044 GATCCGGTTCAGTTTTGCATGATTTTTTGCGCCTTGACTTATTGAAATATCTACATTCACCTAAC
66 GATCCGGTTCAGTTTTGCATGATTTTTTGCGCCAAGACTCATTGAAATATCTACATTCATCTAAC
* * * * * *
22109 CAAATCTTAGGCACAATGAACTTAGGGATTTGATTTGACGAGCACCAGAATCATGTGTCGATTTC
131 CAAATCTCAGGCACAATGGATTTAAGGATTTGATTTGACGAGCATCAGAATCATGTGTCGATTTA
* * * * * *
22174 ATGAGAAATTAATTCGGAAAAATATTGGAAAATGGATATTTCATGCATGAAAAGCCCATCAATAT
196 ATGAGAAATTAATTCGGAAAAATATAGGAAAATCGATATTTGAAGCGTGAAAAGCCCATCAATCT
* * *
22239 TTTTGGTGTTGAATTATATATTTTTTATGAGTAGTCTGGCAAAAAATTGAAGAAAAATTTTTCGG
261 TTTTGGCGTTGAATTATATATTTTTTATGAGTAGTCTGGCCAAAAATTGAAGAATAATTTTTCGG
22304 GTCAATT
326 GTCAATT
* * * *
22311 TTTGCAAAATTTTAGCCCAAA-TCGTG---T-A-CATCA-TGATTTTT-CTTAAAATTGTGTTCC
1 TTTGCAAAATTTTAG--CAAATTCGTGTACTAACCATCACGGTTTTTTGC-TAAAAATGGGTTCC
* *
22368 GGTGTTCCGGTTCAGTTTTGCATGATTTTTTGCGCCAAGACTCATTGAAATATCTATATTCATCT
63 GGTGATCCGGTTCAGTTTTGCATGATTTTTTGCGCCAAGACTCATTGAAATATCTACATTCATCT
* * * * * *
22433 AACAAAATCTCAGCCACAATGGGTTTAAGGATTTAATTTCACGAGCATGAGAATCATGTGTCGAT
128 AACCAAATCTCAGGCACAATGGATTTAAGGATTTGATTTGACGAGCATCAGAATCATGTGTCGAT
* * *
22498 TTAATGAAAAATTAATTCGGAAAAATATAGGAAAATGGATATTTGAAGCCTGAAAAGCCCATCAA
193 TTAATGAGAAATTAATTCGGAAAAATATAGGAAAATCGATATTTGAAGCGTGAAAAGCCCATCAA
*
22563 TCTTTTTGGCGTTGAATTATATATTTTTTATGAGTAGTCTGGCAAAAAATTGAAGAATAATTTTT
258 TCTTTTTGGCGTTGAATTATATATTTTTTATGAGTAGTCTGGCCAAAAATTGAAGAATAATTTTT
22628 CGGGTCAATT
323 CGGGTCAATT
* * *
22638 TTTGCAAAATTTTAGCCCAAATT-GTGTACTAACCATCGCGGTTTTTGGCTAAAAATGCGTTCCG
1 TTTGCAAAATTTTAG--CAAATTCGTGTACTAACCATCACGGTTTTTTGCTAAAAATGGGTTCCG
* * * *
22702 GTGCTCCGGTTCAGTTTTGCATAATTTTTTGCGCCAAGACTCATTGAAGTATCTACATACATCTA
64 GTGATCCGGTTCAGTTTTGCATGATTTTTTGCGCCAAGACTCATTGAAATATCTACATTCATCTA
* ** * *
22767 ACAAAATCTCAACCACAATGGATTTAAGGAATTGATTTGACGAGCATGAGAATCATGTGTCGATT
129 ACCAAATCTCAGGCACAATGGATTTAAGGATTTGATTTGACGAGCATCAGAATCATGTGTCGATT
* *
22832 TATTGAGAAATTAATTCGG-AAAATATAGGAAAATCAATATTTGAAGCGTGAAAAGCCCATCAAT
194 TAATGAGAAATTAATTCGGAAAAATATAGGAAAATCGATATTTGAAGCGTGAAAAGCCCATCAAT
* * * *
22896 TTTTTTAGCGTTGAATTATATAATTTTTACGAGTA
259 CTTTTTGGCGTTGAATTATATATTTTTTATGAGTA
22931 TCATTGAAGT
Statistics
Matches: 2567, Mismatches: 257, Indels: 158
0.86 0.09 0.05
Matches are distributed among these distances:
292 2 0.00
293 27 0.01
294 58 0.02
296 1 0.00
297 1 0.00
299 2 0.00
302 1 0.00
303 3 0.00
304 2 0.00
305 2 0.00
307 1 0.00
308 1 0.00
309 39 0.02
310 16 0.01
311 98 0.04
312 3 0.00
313 1 0.00
314 156 0.06
315 2 0.00
316 1 0.00
318 2 0.00
320 2 0.00
321 3 0.00
322 1 0.00
326 4 0.00
327 413 0.16
328 29 0.01
329 6 0.00
330 27 0.01
331 299 0.12
332 817 0.32
333 542 0.21
334 5 0.00
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (332 bp):
TTTGCAAAATTTTAGCAAATTCGTGTACTAACCATCACGGTTTTTTGCTAAAAATGGGTTCCGGT
GATCCGGTTCAGTTTTGCATGATTTTTTGCGCCAAGACTCATTGAAATATCTACATTCATCTAAC
CAAATCTCAGGCACAATGGATTTAAGGATTTGATTTGACGAGCATCAGAATCATGTGTCGATTTA
ATGAGAAATTAATTCGGAAAAATATAGGAAAATCGATATTTGAAGCGTGAAAAGCCCATCAATCT
TTTTGGCGTTGAATTATATATTTTTTATGAGTAGTCTGGCCAAAAATTGAAGAATAATTTTTCGG
GTCAATT
Found at i:23102 original size:190 final size:189
Alignment explanation
Indices: 22742--23120 Score: 623
Period size: 190 Copynumber: 2.0 Consensus size: 189
22732 GCGCCAAGAC
*
22742 TCATTGAAGTATCTACATACATCTAACAAAATCTCAACCACAATGGATTTAAGGAATTGATTTGA
1 TCATTGAAGTATCTACATACAACTAACAAAATCTCAACCACAATGGATTTAAGGAATTGATTTGA
* *
22807 CGAGCATGAGAATCATGTGTCGATTTATTGAGAAATTAATTCGGAAAATATAGGAAAATCAATAT
66 CGAGCATGAGAATCATGTGCCGATTTAATGAGAAATTAATTCGGAAAATATAGGAAAATCAATAT
* * *
22872 TTGAAGCGTGAAAAGCCCATCAATTTTTTTAGCGTTGAATTATATAATTTTTACGAGTA
131 TAGAAGCGTGAAAAGCCCATCAATCTTTTTAGCATTGAATTATATAATTTTTACGAGTA
* * * *
22931 TCATTGAAGTATCTATATAACAACTAACAAATTCTCAGCCACAATGGATTTAAGGAATTGGTTTG
1 TCATTGAAGTATCTACAT-ACAACTAACAAAATCTCAACCACAATGGATTTAAGGAATTGATTTG
*
22996 ACGAGCATGAGAATCATGTGCCTATTTAATGAGAAATTAATTCGGAAAATATAGGAAAATCAATA
65 ACGAGCATGAGAATCATGTGCCGATTTAATGAGAAATTAATTCGGAAAATATAGGAAAATCAATA
* * *
23061 TTAGAAGCGTGAAAAGCCCATCAATCTTTTTGGCATTGAATTATATATTTTTTATGAGTA
130 TTAGAAGCGTGAAAAGCCCATCAATCTTTTTAGCATTGAATTATATAATTTTTACGAGTA
23121 GTCTGGCATA
Statistics
Matches: 175, Mismatches: 14, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
189 17 0.10
190 158 0.90
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.33
Consensus pattern (189 bp):
TCATTGAAGTATCTACATACAACTAACAAAATCTCAACCACAATGGATTTAAGGAATTGATTTGA
CGAGCATGAGAATCATGTGCCGATTTAATGAGAAATTAATTCGGAAAATATAGGAAAATCAATAT
TAGAAGCGTGAAAAGCCCATCAATCTTTTTAGCATTGAATTATATAATTTTTACGAGTA
Found at i:23394 original size:520 final size:521
Alignment explanation
Indices: 22409--23450 Score: 1542
Period size: 520 Copynumber: 2.0 Consensus size: 521
22399 GCGCCAAGAC
* * * *
22409 TCATTGAAATATCTATATTCATCTAACAAAATCTCAGCCACAATGGGTTTAAGGATTTAATTTCA
1 TCATTGAAATATCTATATACAACTAACAAAATCTCAGCCACAATGGATTTAAGGAATTAATTTCA
* **
22474 CGAGCATGAGAATCATGTGTCGATTTAATGAAAAATTAATTCGGAAAAATATAGGAAAATGGATA
66 CGAGCATGAGAATCATGTGCCGATTTAATGAAAAATTAATTCGGAAAAATATAGGAAAATCAATA
* *
22539 TTTGAAGCCTGAAAAGCCCATCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTAGTCTG
131 TTAGAAGCCTGAAAAGCCCATCAATCTTTTTGGCATTGAATTATATATTTTTTATGAGTAGTCTG
*
22604 GCAAAAAATTGAAGAATAATTTTTCGGGTCAATTTTTGCAAAATTTTAGCCCAAATTGTGTACTA
196 GCAAAAAATTAAAGAATAATTTTTCGGGTCAATTTTTGCAAAATTTTAG-CCAAATTGTGTACTA
* * *
22669 ACCATCGCGGTTTTTGGCTAAAAATGCGTTCCGGTGCTCCGGTTCAGTTTTGCATAATTTTTTGC
260 ACCATCACGGTTTTTGGCTAAAAATGCGTTCCGGTGATCCGATTCAGTTTTGCATAATTTTTTGC
* * *
22734 GCCAAGACTCATTGAAGTATCTACATACATCTAACAAAATCTCAACCACAATGGATTTAAGGAAT
325 GCCAAGACTCATTGAAATATCAACATACACCTAACAAAATCTCAACCACAATGGATTTAAGGAAT
22799 TGATTTGACGAGCATGAGAATCATGTGTCGATTTATTGAGAAATTAATTCGGAAAATATAGGAAA
390 TGATTTGACGAGCATGAGAATCATGTGTCGATTTATTGAGAAATTAATTCGGAAAATATAGGAAA
*
22864 ATCAATATTTGAA-GCGTGAAAAGCCCATCAATTTTTTTAGCGTTGAATTATATAATTTTTACGA
455 ATCAATATTTGAAGGC-TGAAAAGCCCATCAATCTTTTTAGCGTTGAATTATATAATTTTTACGA
22928 GTA
519 GTA
* * ** *
22931 TCATTGAAGTATCTATATAACAACTAACAAATTCTCAGCCACAATGGATTTAAGGAATTGGTTTG
1 TCATTGAAATATCTATAT-ACAACTAACAAAATCTCAGCCACAATGGATTTAAGGAATTAATTTC
* *
22996 ACGAGCATGAGAATCATGTGCCTATTTAATGAGAAATTAATTCGG-AAAATATAGGAAAATCAAT
65 ACGAGCATGAGAATCATGTGCCGATTTAATGAAAAATTAATTCGGAAAAATATAGGAAAATCAAT
*
23060 ATTAGAAGCGTGAAAAGCCCATCAATCTTTTTGGCATTGAATTATATATTTTTTATGAGTAGTCT
130 ATTAGAAGCCTGAAAAGCCCATCAATCTTTTTGGCATTGAATTATATATTTTTTATGAGTAGTCT
* *
23125 GGCATAAAATTAAAGACA-AATTTTTCGGGTCAA-TTTTGCAAAATTTTAG-CAAATTCGTGTTC
195 GGCAAAAAATTAAAGA-ATAATTTTTCGGGTCAATTTTTGCAAAATTTTAGCCAAATT-GTGTAC
* * * * *
23187 TAACCATTACGGTTTTTTGCTAGAAATGGGTTCCGGTGATCCGATTCAGTTTTGCATGATTTTTT
258 TAACCATCACGGTTTTTGGCTAAAAATGCGTTCCGGTGATCCGATTCAGTTTTGCATAATTTTTT
** * ** * **
23252 GCGCCTTGACTTATTGAAATATCAACATTTACCTAACCAAATCTCAGGCACAATGGATTT-AGGA
323 GCGCCAAGACTCATTGAAATATCAACATACACCTAACAAAATCTCAACCACAATGGATTTAAGGA
23316 ATTCGATTTGACGAGCATGAGAATCAT-TGTCGATTTCA-TGAGAAATTAATTCGGAAAAATATA
388 ATT-GATTTGACGAGCATGAGAATCATGTGTCGATTT-ATTGAGAAATTAATTCGG-AAAATATA
** * * *
23379 GGAAAATGGATATTTGAAGGCTTAAAAGCCCATCAATCTTTTTGGCGTTGAATTATATATTTTTT
450 GGAAAATCAATATTTGAAGGCTGAAAAGCCCATCAATCTTTTTAGCGTTGAATTATATAATTTTT
*
23444 ATGAGTA
515 ACGAGTA
23451 GTCCGGCAAA
Statistics
Matches: 467, Mismatches: 46, Indels: 16
0.88 0.09 0.03
Matches are distributed among these distances:
519 38 0.08
520 205 0.44
521 18 0.04
522 125 0.27
523 81 0.17
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (521 bp):
TCATTGAAATATCTATATACAACTAACAAAATCTCAGCCACAATGGATTTAAGGAATTAATTTCA
CGAGCATGAGAATCATGTGCCGATTTAATGAAAAATTAATTCGGAAAAATATAGGAAAATCAATA
TTAGAAGCCTGAAAAGCCCATCAATCTTTTTGGCATTGAATTATATATTTTTTATGAGTAGTCTG
GCAAAAAATTAAAGAATAATTTTTCGGGTCAATTTTTGCAAAATTTTAGCCAAATTGTGTACTAA
CCATCACGGTTTTTGGCTAAAAATGCGTTCCGGTGATCCGATTCAGTTTTGCATAATTTTTTGCG
CCAAGACTCATTGAAATATCAACATACACCTAACAAAATCTCAACCACAATGGATTTAAGGAATT
GATTTGACGAGCATGAGAATCATGTGTCGATTTATTGAGAAATTAATTCGGAAAATATAGGAAAA
TCAATATTTGAAGGCTGAAAAGCCCATCAATCTTTTTAGCGTTGAATTATATAATTTTTACGAGT
A
Done.