Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007791.1 Corchorus capsularis cultivar CVL-1 contig07812, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11556
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33


Found at i:290 original size:2 final size:2

Alignment explanation


    Indices: 283--308  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

        273 TAGTTTCATA

                                                  
        283 AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT

        309 TTAAATTTTG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:11531 original size:2 final size:2

Alignment explanation


    Indices: 11524--11556  Score: 66
    Period size: 2  Copynumber: 16.5  Consensus size: 2

      11514 ATGTTACTCT

                                                             
      11524 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.