Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007792.1 Corchorus capsularis cultivar CVL-1 contig07813, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84688

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
811--841
2
15.0
2
93
6
53
48
0
3
48
1.17
7684--7727
21
2.1
21
86
0
61
45
2
6
45
1.42
8543--8569
2
13.5
2
100
0
54
51
0
0
48
1.00
11265--11558
99
2.9
100
76
12
285
45
7
12
34
1.71
12506--12553
2
23.5
2
82
4
60
52
6
41
0
1.27
19626--19672
12
3.9
11
86
13
58
87
10
2
0
0.63
19625--19673
13
3.9
12
89
5
71
87
10
2
0
0.62
19624--19673
19
2.7
19
90
3
75
88
10
2
0
0.61
20000--20033
6
5.8
6
96
3
61
14
14
35
35
1.87
32075--32119
23
2.0
23
91
8
74
51
11
11
26
1.71
43715--43744
15
2.0
15
93
0
51
0
16
0
83
0.65
59998--60049
22
2.5
20
82
11
77
26
17
26
28
1.97
68577--68662
43
2.0
43
95
0
154
20
13
16
48
1.80
75735--75774
20
2.0
20
100
0
80
60
5
5
30
1.40
79747--79884
70
2.0
69
87
7
199
25
13
12
48
1.77
81313--81388
22
3.3
22
72
13
71
50
7
22
19
1.73
83158--83228
33
2.1
34
92
2
117
28
11
5
54
1.58
84150--84674
7
77.0
7
93
6
879
14
0
44
40
1.47

Tables:   1

The End!