genome.fa.s7793.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007793.1 Corchorus capsularis cultivar CVL-1 contig07814, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102033

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10061--10099	19	2.1	19	85	0	51	66	5	17	10	1.39
11900--12453	38	14.7	38	80	4	613	33	19	18	27	1.96
11895--12453	113	4.9	112	83	2	652	33	19	18	27	1.96
11899--12453	75	7.4	75	82	4	573	33	19	18	27	1.96
12451--12586	43	3.1	43	78	3	157	27	18	17	36	1.93
15636--16123	39	13.1	37	81	11	395	44	12	15	27	1.82
15695--16195	36	13.7	35	85	6	450	44	10	16	28	1.82
15636--16195	188	3.0	184	81	10	578	44	11	16	27	1.82
17790--17819	4	7.5	4	92	0	51	23	0	3	73	0.98
21558--21687	31	4.3	30	81	3	136	19	23	26	30	1.98
21575--21687	31	3.7	30	85	2	147	18	23	25	32	1.97
27814--27853	13	3.1	14	79	17	50	0	17	0	82	0.67
27809--27857	15	3.1	16	82	14	57	0	16	0	83	0.64
27807--27857	17	2.7	19	79	14	61	0	17	0	82	0.67
35980--37324	210	6.3	216	88	4	1916	35	7	20	36	1.81
35980--37313	428	3.1	426	89	3	1983	35	7	20	36	1.81
47149--47223	29	2.6	29	87	6	100	13	10	36	40	1.79
54716--54765	20	2.5	20	93	0	82	16	38	36	10	1.82
56321--56488	41	4.0	41	77	11	164	45	11	16	27	1.81
56534--57347	41	19.9	41	91	2	1220	47	9	21	22	1.79
57349--57448	32	2.9	34	82	15	134	42	6	22	30	1.77
57448--57550	37	2.9	35	85	7	113	43	6	17	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57395--57501	58	1.9	56	86	7	155	40	6	18	34	1.77
57363--57538	90	1.9	91	91	1	291	42	6	19	32	1.76
58331--58431	32	3.2	32	84	5	132	33	25	17	22	1.96
58359--58501	32	4.5	31	72	10	83	33	23	21	21	1.97
59993--60028	17	2.1	18	94	5	65	44	0	0	55	0.99
64379--64563	90	2.1	90	91	2	300	14	18	11	55	1.69
84266--84290	13	1.9	13	100	0	50	0	12	0	88	0.53
90909--90938	15	2.0	15	100	0	60	20	20	20	40	1.92
101139--101268	49	2.7	49	81	2	145	21	29	15	33	1.94
101419--101571	62	2.5	62	84	0	189	28	23	15	33	1.95

Tables:   1

The End!