Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007795.1 Corchorus capsularis cultivar CVL-1 contig07816, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43116

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8119--8465
48
7.2
48
88
3
475
26
31
12
29
1.93
8458--8678
62
3.6
61
82
5
275
26
24
14
33
1.94
10649--10688
21
1.9
21
84
0
53
45
22
20
12
1.84
12149--12179
16
1.9
16
93
0
53
19
6
19
54
1.65
13942--14064
61
2.0
61
98
0
237
36
19
26
17
1.94
21364--21408
2
22.5
2
95
0
81
48
48
2
0
1.13
22908--22943
19
1.9
18
88
5
54
38
5
22
33
1.77
28839--28868
11
2.7
11
94
0
51
40
0
20
40
1.52
28851--28886
19
1.9
18
88
5
54
41
5
22
30
1.76
33494--33728
35
6.7
35
83
6
260
34
17
9
38
1.83
33600--33659
19
3.3
19
65
13
54
33
20
10
36
1.86
36459--36805
173
2.0
173
98
0
667
44
15
19
19
1.86
37215--37526
36
8.6
36
79
9
269
39
29
14
16
1.89
37215--37430
107
2.0
108
88
4
326
40
26
15
17
1.89
37591--37622
16
2.0
16
93
0
55
46
6
18
28
1.73
38285--38403
21
5.5
22
75
19
83
21
18
6
52
1.68
38319--38542
43
4.9
44
77
13
213
17
19
7
55
1.64
38844--38933
29
3.2
29
66
20
82
24
18
8
47
1.77
38818--39304
55
8.8
55
90
0
731
26
16
6
50
1.69
39207--39293
26
3.2
26
70
20
88
26
16
5
51
1.66
42135--42159
2
12.5
2
100
0
50
48
0
0
52
1.00

Tables:   1

The End!