genome.fa.s7799.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007799.1 Corchorus capsularis cultivar CVL-1 contig07820, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36294

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2122--2166	15	3.2	14	81	12	56	80	2	8	8	1.00
6624--6674	26	2.0	26	92	3	86	23	19	19	37	1.94
6826--6863	15	2.6	14	84	15	51	26	18	15	39	1.91
9916--10442	48	11.0	48	86	1	709	12	24	22	39	1.89
10422--10474	26	2.0	26	96	0	97	11	16	26	45	1.82
10326--10548	120	1.8	122	81	1	279	13	22	23	40	1.89
10467--10650	48	3.8	48	84	5	237	10	28	21	38	1.87
10279--10596	168	1.9	169	82	5	403	12	23	23	40	1.89
10232--10649	216	1.9	216	82	3	511	12	24	22	39	1.89
13251--13300	14	3.5	14	86	8	57	42	8	12	38	1.71
13241--13302	14	4.4	13	82	11	52	46	9	11	32	1.72
13969--14009	11	3.6	11	84	15	57	80	0	19	0	0.71
14249--14291	17	2.5	18	81	11	54	62	0	32	4	1.15
15739--16198	35	13.0	35	85	4	595	26	17	25	31	1.97
15739--16198	212	2.2	212	88	4	698	26	17	25	31	1.97
16229--16892	89	7.4	88	88	4	759	25	15	26	32	1.96
19289--19353	21	3.0	20	68	23	60	30	12	18	38	1.88
20412--21169	48	15.8	48	84	0	892	12	25	23	39	1.89
24105--24209	33	3.2	33	79	5	113	23	11	20	43	1.84
24158--24245	33	2.7	32	84	8	106	28	10	20	40	1.85
24225--24343	33	3.6	33	88	0	166	31	8	17	42	1.79
27062--27090	12	2.4	12	100	0	58	37	6	6	48	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29838--29933	21	4.5	21	67	22	67	14	46	23	14	1.82
29844--29977	63	2.1	63	100	0	268	15	48	22	13	1.80
31607--31650	21	2.0	22	82	4	54	54	11	22	11	1.68
32385--32430	13	3.5	13	79	5	56	58	13	0	28	1.35
34423--34451	13	2.1	14	93	6	51	20	20	10	48	1.79

Tables:   1

The End!