Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007802.1 Corchorus capsularis cultivar CVL-1 contig07823, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87342

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12859--12883
10
2.5
10
100
0
50
24
8
20
48
1.76
15297--15364
21
3.2
21
66
22
61
13
27
50
8
1.71
15299--15401
42
2.5
42
100
0
206
11
29
51
7
1.66
15304--15371
21
3.2
21
66
22
61
13
27
51
7
1.67
15325--15392
21
3.2
21
66
22
61
11
27
50
10
1.71
25389--25419
14
2.2
14
94
0
53
16
9
6
67
1.39
26436--26487
21
2.5
21
77
0
59
32
9
25
32
1.88
29687--29730
20
2.3
19
84
4
52
29
25
11
34
1.91
29867--29954
26
3.4
26
87
0
131
18
32
18
30
1.95
30100--30132
15
2.2
15
100
0
66
18
12
18
51
1.76
29997--30194
63
3.1
64
82
2
204
21
20
21
37
1.95
39617--39660
15
3.1
15
84
15
51
61
6
6
25
1.46
40079--40138
27
2.3
27
85
2
77
60
6
3
30
1.39
49401--49425
10
2.5
10
100
0
50
48
20
8
24
1.76
56597--56621
10
2.5
10
100
0
50
48
20
8
24
1.76
57555--57581
6
4.5
6
100
0
54
29
0
14
55
1.40
62204--62235
6
5.7
6
92
7
50
56
9
0
34
1.32
67162--67541
190
2.0
189
96
0
697
42
20
13
22
1.88
73699--73822
33
3.7
33
82
6
151
23
41
27
8
1.82
75186--75223
15
2.6
15
83
4
51
71
7
5
15
1.28
78559--78611
26
2.0
26
100
0
106
7
3
41
47
1.50
84212--84240
15
1.9
15
100
0
58
20
3
27
48
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85937--85986
16
3.4
16
71
25
56
36
10
34
20
1.86
85915--85985
27
2.6
27
93
0
124
39
11
28
21
1.87

Tables:   1

The End!