Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007804.1 Corchorus capsularis cultivar CVL-1 contig07825, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47188

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10--104
22
4.3
21
70
17
59
32
6
21
40
1.78
201--299
42
2.3
44
79
10
107
40
9
14
36
1.77
123--391
22
12.4
22
70
10
126
42
10
14
33
1.79
467--505
20
2.0
20
94
0
69
38
10
23
28
1.87
441--698
22
11.6
23
69
12
105
39
8
17
34
1.80
615--698
23
3.7
23
82
4
100
39
8
17
34
1.80
648--707
23
2.7
23
81
2
68
36
15
10
38
1.80
765--841
22
3.5
21
77
7
55
35
12
14
37
1.84
777--842
22
3.0
22
80
4
69
31
12
16
39
1.85
1020--1044
13
1.9
13
100
0
50
40
8
0
52
1.31
1142--1181
6
6.2
6
83
16
53
52
15
0
32
1.43
3939--4112
87
2.0
87
100
0
348
34
10
24
31
1.89
5450--5497
8
6.1
8
80
9
55
20
27
0
52
1.47
5451--5494
14
2.9
15
83
13
54
20
27
0
52
1.47
5537--5711
64
2.7
65
84
7
207
13
36
34
15
1.87
5537--5711
32
5.5
33
77
9
150
13
36
34
15
1.87
5767--5900
32
4.2
33
80
5
132
12
38
35
13
1.83
6607--6662
2
28.5
2
76
16
55
48
1
3
46
1.30
6744--6770
9
3.0
9
100
0
54
0
11
0
88
0.50
9403--9523
16
7.6
16
94
1
217
5
13
39
41
1.68
9403--9541
32
4.3
32
90
2
217
5
13
41
39
1.69
9403--9541
48
2.9
47
91
2
215
5
13
41
39
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10285--10342
6
10.2
6
81
10
68
5
17
46
31
1.70
10285--10326
11
3.8
11
90
9
68
0
19
52
28
1.46
10285--10326
17
2.5
17
88
11
61
0
19
52
28
1.46
10285--10341
22
2.5
23
85
5
80
5
17
47
29
1.70
10350--10390
16
2.6
16
100
0
82
7
12
39
41
1.70
10329--10390
32
1.9
32
83
6
81
8
14
37
40
1.76
10437--10470
17
2.0
17
88
11
52
0
17
52
29
1.45
13676--13700
12
2.1
12
100
0
50
16
16
16
52
1.76
15620--15673
27
2.0
27
92
0
90
20
14
29
35
1.93
19842--19959
60
2.0
60
100
0
236
24
15
14
45
1.83
22635--22955
108
3.0
104
76
10
315
37
13
7
41
1.73
28357--28449
46
2.0
46
100
0
186
27
25
25
20
1.99
28725--28760
16
2.3
15
95
4
63
61
0
0
38
0.96
29452--29488
16
2.3
16
90
0
56
10
10
0
78
0.97
37196--37237
22
1.9
22
85
0
57
35
30
21
11
1.90
37364--37416
13
3.7
15
69
21
51
66
15
0
18
1.26
37375--37427
26
2.0
26
96
0
97
64
18
1
15
1.38
38077--38124
21
2.2
21
85
3
60
39
35
12
12
1.81
41812--41841
6
5.0
6
95
0
51
16
0
80
3
0.85
43842--43914
36
2.0
36
97
0
137
42
20
10
26
1.85
44281--44318
20
1.9
20
88
0
58
42
23
5
28
1.76
44963--44987
5
5.0
5
100
0
50
0
40
0
60
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45325--45394
29
2.4
30
85
2
97
17
30
14
38
1.89
45413--45492
29
2.7
30
82
3
108
35
16
31
17
1.92

Tables:   1

The End!