Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007805.1 Corchorus capsularis cultivar CVL-1 contig07826, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44943

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10330--10412
42
2.0
42
90
0
130
20
20
8
50
1.74
10412--10830
37
11.4
37
91
1
628
27
18
8
46
1.77
18476--18505
13
2.2
14
94
5
53
53
10
6
30
1.60
19752--19787
19
1.9
18
88
5
54
33
22
2
41
1.68
23612--23680
29
2.5
26
78
19
68
72
0
18
8
1.10
24948--25220
34
7.9
34
87
3
368
17
20
21
39
1.92
25244--25456
35
6.1
35
84
7
272
31
15
19
33
1.93
25473--25545
35
2.1
35
94
0
128
31
17
16
34
1.93
25384--25597
89
2.4
89
92
0
340
28
15
20
35
1.93
25508--25890
54
7.1
54
82
2
450
22
16
26
33
1.95
25508--25890
107
3.6
106
84
2
444
22
16
26
33
1.95
27355--27636
12
23.3
12
64
21
76
26
9
2
60
1.41
27433--27497
17
4.2
16
81
16
68
30
7
3
58
1.42
27546--27649
4
25.8
4
73
11
61
25
4
2
66
1.26
27546--27636
24
3.9
24
81
2
87
27
5
2
64
1.27
41569--41593
13
1.9
13
100
0
50
40
0
20
40
1.52
41623--41714
31
3.0
31
78
10
98
33
7
13
45
1.71
41627--41712
30
2.8
32
79
12
90
36
8
11
44
1.71

Tables:   1

The End!