Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007806.1 Corchorus capsularis cultivar CVL-1 contig07827, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27416

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8--131
66
1.9
66
91
0
203
37
4
5
51
1.47
91--145
20
2.7
20
91
5
83
40
7
7
45
1.60
184--232
21
2.3
21
78
18
57
34
6
6
53
1.51
152--231
23
3.2
23
77
16
79
38
6
5
50
1.50
1622--1654
2
16.5
2
100
0
66
48
0
0
51
1.00
4939--5086
76
2.0
76
83
4
192
38
6
25
29
1.80
5438--5497
16
3.8
16
82
8
70
40
38
15
6
1.73
5486--5517
16
2.0
16
93
0
55
25
53
21
0
1.46
6022--6115
47
2.0
47
100
0
188
23
29
4
42
1.73
6358--6430
15
4.7
16
88
6
114
41
39
13
5
1.68
6358--6430
31
2.4
31
95
0
128
41
39
13
5
1.68
6403--6450
6
7.8
6
78
21
55
29
50
18
2
1.59
6419--6453
10
3.3
10
92
8
52
22
60
17
0
1.37
6462--6523
28
2.2
28
100
0
124
20
14
30
33
1.93
9352--9383
7
4.6
7
92
0
55
31
15
0
53
1.43
12308--12355
3
16.3
3
80
20
57
37
0
0
62
0.95
12308--12355
18
2.7
18
90
9
73
37
0
0
62
0.95
12311--12354
14
3.1
14
90
9
63
38
0
0
61
0.96
12413--12444
16
1.9
17
93
6
57
0
0
12
87
0.54
17824--17863
16
2.5
16
84
8
55
32
10
45
12
1.75
19109--19255
40
3.7
40
88
5
217
50
11
13
24
1.75
19260--19415
78
2.1
75
89
6
235
49
7
19
23
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19285--19478
73
2.6
75
86
5
259
47
7
21
23
1.76
19433--19511
41
1.9
42
89
2
124
45
10
22
21
1.81
19517--19685
35
4.8
35
94
2
293
49
10
11
28
1.72
19744--19869
11
11.2
11
83
5
162
59
8
23
7
1.54
19858--20132
35
7.8
35
81
6
290
43
9
22
25
1.82
19858--20098
109
2.3
109
82
6
298
42
8
22
25
1.82

Tables:   1

The End!