Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007808.1 Corchorus capsularis cultivar CVL-1 contig07829, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3678
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.35


Found at i:1674 original size:2 final size:2

Alignment explanation


    Indices: 1662--1710  Score: 64
    Period size: 2  Copynumber: 25.0  Consensus size: 2

       1652 GATTGCTAGC

                     *                        *                       *   
       1662 AT AT AT GT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT AA AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

                       
       1704 -T AT AT AT
          1 AT AT AT AT

       1711 TACATGTTTC


Statistics
Matches: 40,  Mismatches: 6, Indels: 2
        0.83            0.12        0.04

Matches are distributed among these distances:
   1    1  0.03
   2   39  0.98

ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47


Consensus pattern (2 bp):   
AT

Done.