Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007811.1 Corchorus capsularis cultivar CVL-1 contig07832, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76776

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7890--7923
17
1.9
18
88
5
52
44
0
2
52
1.16
9253--9311
31
1.9
30
89
6
84
22
23
16
37
1.94
18230--18387
22
7.2
22
75
9
110
37
13
9
38
1.78
18230--18387
44
3.6
44
79
6
128
37
13
9
38
1.78
18616--18659
4
11.0
4
90
0
52
50
9
0
40
1.34
19447--19502
19
2.9
19
74
10
69
58
17
1
21
1.47
25499--25562
24
2.7
24
78
9
85
26
4
26
42
1.75
26951--26988
20
1.9
20
94
0
67
26
7
15
50
1.72
27182--27240
31
1.9
31
85
0
82
42
18
10
28
1.83
34266--34299
4
8.5
4
93
0
59
47
23
2
26
1.66
34297--34327
2
15.5
2
100
0
62
51
0
0
48
1.00
39070--39250
87
2.2
84
79
6
181
12
11
23
52
1.71
51005--51058
22
2.5
22
100
0
108
37
14
18
29
1.91
55057--55125
35
2.0
34
97
2
129
40
14
31
13
1.84
57372--57435
27
2.5
26
74
5
67
17
9
23
50
1.75
58820--58846
1
27.0
1
100
0
54
100
0
0
0
0.00
68322--68418
33
3.0
33
85
8
146
20
52
3
23
1.60
68347--68413
30
2.4
27
81
13
98
20
53
2
22
1.59
74802--75132
141
2.4
141
89
3
515
37
9
9
43
1.71
75420--75813
139
2.8
139
84
5
488
35
11
9
43
1.73
75992--76386
212
1.9
209
91
3
650
47
8
10
33
1.68

Tables:   1

The End!