genome.fa.s7817.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007817.1 Corchorus capsularis cultivar CVL-1 contig07838, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36008

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6522--6558	19	2.0	18	89	5	56	40	8	21	29	1.82
8071--8124	28	2.0	26	82	7	63	35	1	11	51	1.48
8516--8596	37	2.2	37	93	0	135	46	6	19	27	1.73
8558--8956	55	7.0	55	83	11	484	49	7	18	25	1.72
8558--8956	109	3.5	110	87	7	493	49	7	18	25	1.72
8793--8904	34	3.2	34	67	20	95	47	6	18	27	1.73
8722--9028	126	2.5	124	86	6	417	49	6	18	25	1.70
8667--9084	181	2.2	189	85	7	566	49	6	18	25	1.71
8772--8884	34	3.2	36	70	16	108	46	6	19	28	1.74
8915--9084	34	4.8	34	73	18	143	50	7	16	25	1.70
8914--9146	74	3.2	68	79	11	209	49	6	17	26	1.71
9214--9264	25	2.0	24	85	14	68	52	5	23	17	1.66
9247--9275	15	1.9	15	100	0	58	41	6	24	27	1.80
9332--9377	15	3.1	15	73	17	51	56	2	21	19	1.52
9287--9447	64	2.5	64	91	3	254	56	4	19	18	1.60
9381--9444	27	2.3	29	83	5	87	53	6	23	17	1.66
9531--9630	28	3.7	26	87	9	137	53	4	19	24	1.62
9531--9643	27	4.1	27	75	15	97	56	3	17	22	1.56
9574--9700	36	3.8	34	83	10	149	57	4	18	18	1.58
10066--10900	41	19.6	41	76	14	644	38	20	25	15	1.92
10087--10542	169	2.7	168	90	2	693	38	20	25	15	1.91
10066--10753	128	5.4	126	82	9	699	38	20	25	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10066--10836	87	9.1	82	78	13	585	37	20	25	15	1.92
10066--10669	169	3.6	170	82	9	660	38	19	25	15	1.92
10628--10882	47	5.7	48	71	20	212	35	21	26	16	1.95
10610--10900	88	3.3	87	92	2	460	37	20	26	15	1.93
10087--10900	169	4.8	168	78	11	481	37	20	25	15	1.92
10944--10973	16	1.9	15	93	6	51	36	6	26	30	1.82
11121--12203	37	29.3	36	75	11	886	44	15	16	23	1.85
11121--12203	74	14.6	74	92	0	1693	44	15	16	23	1.85
12956--13116	87	1.9	87	84	5	218	27	23	12	36	1.91
13244--13290	5	9.4	5	79	9	51	2	14	2	80	0.89
13238--13284	15	3.3	15	77	17	55	4	12	4	78	1.04
14025--14081	1	57.0	1	76	0	51	1	8	1	87	0.68
14025--14081	11	5.4	10	80	17	62	1	8	1	87	0.68
14031--14081	27	1.9	27	88	4	77	1	9	1	86	0.73
14025--14081	23	2.6	22	82	15	73	1	8	1	87	0.68
14025--14082	17	3.6	16	80	19	66	1	8	3	86	0.76
14638--15011	47	7.6	47	81	11	302	23	19	8	48	1.75
14608--15056	55	8.7	55	81	11	413	23	18	7	49	1.73
14625--15056	101	4.2	100	77	11	337	23	18	7	49	1.73
14638--14999	148	2.4	148	85	2	465	23	19	8	48	1.75
14917--15020	50	2.1	49	89	1	154	26	19	5	48	1.71
17359--17420	32	1.9	32	90	6	99	48	6	4	40	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17391--17432	19	2.2	19	86	4	57	45	7	7	40	1.59
19545--19699	51	3.1	50	77	10	156	36	14	3	45	1.62
22039--22145	27	3.9	27	90	2	151	38	25	20	15	1.92
30992--31155	62	2.6	64	75	5	165	41	21	12	24	1.88
32233--32339	33	3.2	33	81	5	92	11	28	38	22	1.88

Tables:   1

The End!