Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007821.1 Corchorus capsularis cultivar CVL-1 contig07842, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8529
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34


Found at i:2522 original size:32 final size:31

Alignment explanation


    Indices: 2450--2522  Score: 83
    Period size: 32  Copynumber: 2.3  Consensus size: 31

       2440 CTAAATTGAT

                            *  *     * *   
       2450 AGACAAAATAACCCTCGAATTTTGATATATA
          1 AGACAAAATAACCCTCAAACTTTGAAAAATA

                *                            
       2481 AGGATAAAATAACCCTCAAACTTTGACAAAATA
          1 A-GACAAAATAACCCTCAAACTTTGA-AAAATA

                     
       2514 AGACAAAAT
          1 AGACAAAAT

       2523 GTTCTTTGAA


Statistics
Matches: 34,  Mismatches: 6, Indels: 3
        0.79            0.14        0.07

Matches are distributed among these distances:
  31    1  0.03
  32   28  0.82
  33    5  0.15

ACGTcount: A:0.51, C:0.16, G:0.10, T:0.23


Consensus pattern (31 bp):   
AGACAAAATAACCCTCAAACTTTGAAAAATA

Found at i:8216 original size:17 final size:18

Alignment explanation


    Indices: 8194--8230  Score: 67
    Period size: 17  Copynumber: 2.1  Consensus size: 18

       8184 GCAGCCTATC

                              
       8194 ACCTCATACTACCT-GGT
          1 ACCTCATACTACCTAGGT

                              
       8211 ACCTCATACTACCTAGGT
          1 ACCTCATACTACCTAGGT

              
       8229 AC
          1 AC

       8231 TATGGGGAGG


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  17   14  0.74
  18    5  0.26

ACGTcount: A:0.27, C:0.35, G:0.11, T:0.27


Consensus pattern (18 bp):   
ACCTCATACTACCTAGGT
Done.