Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007823.1 Corchorus capsularis cultivar CVL-1 contig07844, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53018

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5131--5214
13
6.5
13
73
15
50
46
1
1
51
1.16
8246--8286
16
2.6
16
92
0
64
48
0
0
51
1.00
8237--8281
20
2.3
19
80
3
63
53
0
0
46
1.00
11845--11883
12
3.6
12
80
19
50
25
25
15
33
1.95
11933--11990
20
3.1
19
73
22
59
24
22
17
36
1.95
11984--12009
10
2.6
10
100
0
52
38
23
7
30
1.83
13435--13475
12
3.3
12
93
6
73
21
26
17
34
1.95
13437--13474
13
3.0
13
96
3
69
23
23
15
36
1.94
13728--13781
27
2.0
27
82
3
65
46
16
11
25
1.80
13806--13831
2
13.0
2
100
0
52
50
0
0
50
1.00
15566--15608
20
2.0
21
91
8
70
37
13
0
48
1.43
16930--16960
11
2.7
12
95
5
55
0
19
3
77
0.90
17222--17281
25
2.5
24
83
5
75
8
16
16
58
1.61
20519--20584
31
2.1
31
91
5
107
27
16
6
50
1.69
20714--20803
38
2.4
37
75
14
94
12
22
12
53
1.71
20861--20983
22
5.6
22
74
10
108
43
10
13
31
1.78
20861--21006
44
3.3
44
75
3
150
43
10
13
32
1.79
21110--21518
22
18.5
22
67
16
132
38
9
16
35
1.82
21253--21342
23
4.0
23
82
1
92
40
7
16
35
1.78
21547--21601
22
2.5
22
87
0
74
40
7
12
40
1.71
21571--21722
62
2.5
62
86
0
205
42
9
13
35
1.76
26298--26334
19
1.9
19
88
0
56
32
5
2
59
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26416--26455
19
2.1
19
90
0
62
30
5
0
65
1.14
43706--43810
33
3.3
31
84
7
122
16
34
36
13
1.87
43877--43961
33
2.6
33
90
0
125
10
31
41
16
1.82
45016--45046
2
15.5
2
100
0
62
51
0
0
48
1.00
48633--48671
2
19.5
2
100
0
78
51
0
0
48
1.00

Tables:   1

The End!