genome.fa.s7825.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007825.1 Corchorus capsularis cultivar CVL-1 contig07846, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99905

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
881--935	2	27.5	2	86	0	74	56	1	0	41	1.10
1876--1962	45	1.9	45	85	0	120	36	16	11	35	1.84
2086--2203	60	2.0	61	86	5	168	33	15	8	42	1.77
1873--2330	22	20.9	22	71	13	182	35	15	9	38	1.81
2277--2359	42	2.0	42	80	4	96	34	14	8	42	1.76
2438--2579	22	6.6	21	74	8	99	36	14	7	40	1.75
2672--2832	22	7.4	20	71	13	79	37	17	8	36	1.79
2687--2832	66	2.2	65	76	10	145	39	17	8	34	1.81
2674--2832	44	3.7	43	77	9	144	38	17	8	35	1.80
2837--3038	22	9.0	21	74	10	111	35	15	10	38	1.82
2872--3068	44	4.4	44	76	10	168	36	15	10	38	1.82
2941--3067	45	2.8	44	78	12	134	36	14	10	39	1.80
2873--3070	22	8.9	22	72	9	114	36	15	10	37	1.81
3288--3605	166	1.9	165	84	6	430	43	10	10	36	1.72
4335--4505	87	2.0	87	92	0	288	34	12	9	43	1.76
5837--5922	42	2.1	42	86	6	122	43	19	10	26	1.84
6571--6608	11	3.5	11	85	10	51	57	2	0	39	1.12
6808--6860	16	3.2	16	79	10	63	11	22	5	60	1.52
9124--9165	13	3.2	13	80	19	52	42	0	0	57	0.99
9130--9175	2	24.0	2	83	16	62	45	0	2	52	1.13
9127--9174	11	4.3	11	92	7	71	43	0	2	54	1.12
12344--12369	12	2.2	12	100	0	52	0	0	7	92	0.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18945--19011	33	2.0	33	100	0	134	34	2	23	38	1.70
23192--23279	44	2.0	44	90	0	140	29	25	20	25	1.99
25512--25560	10	4.7	10	80	12	55	38	0	2	59	1.09
25511--25560	25	2.0	25	96	0	91	38	0	2	60	1.09
27399--27445	20	2.4	20	82	3	60	17	4	19	59	1.53
27621--27667	14	3.7	12	85	8	58	31	0	10	57	1.33
29248--29287	18	2.2	18	100	0	80	45	27	10	17	1.80
29240--29284	18	2.6	17	89	3	63	42	31	11	15	1.82
31320--31390	32	2.2	33	82	2	81	15	36	29	18	1.92
31372--31445	32	2.3	32	97	0	139	16	31	36	16	1.91
34819--34925	44	2.4	45	96	1	198	29	13	4	52	1.60
34905--35117	103	2.0	105	95	4	385	48	10	5	35	1.61
36786--36815	11	2.7	11	94	0	51	6	33	23	36	1.81
42196--42333	53	2.6	53	85	4	181	42	10	16	29	1.82
47483--47533	23	2.2	24	85	3	68	47	27	1	23	1.63
47587--47656	33	2.1	35	83	5	90	68	8	12	10	1.39
53513--54319	125	6.5	125	81	2	753	33	17	13	35	1.88
53528--54245	374	1.9	375	80	3	836	33	16	13	35	1.88
54484--54512	14	2.1	14	100	0	58	44	6	6	41	1.58
55831--55877	15	2.9	16	81	15	53	6	17	0	76	0.98
56807--57009	103	2.0	102	89	0	307	21	6	27	44	1.77
57165--57236	30	2.4	31	83	6	85	33	20	19	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61580--61632	24	2.2	24	86	0	70	33	16	5	43	1.72
61647--61675	3	9.7	3	100	0	58	68	0	31	0	0.89
61609--61728	63	1.9	62	84	5	161	47	10	18	24	1.79
63253--63384	37	3.8	35	80	7	146	22	10	12	53	1.69
66117--66150	11	3.2	10	84	15	50	50	17	2	29	1.61
66945--67002	18	3.1	19	73	9	57	60	6	32	0	1.23
67203--67256	25	2.2	25	93	0	90	22	20	37	20	1.95
68596--68627	2	16.0	2	100	0	64	50	0	0	50	1.00
70727--71369	323	2.0	320	93	1	1090	26	17	20	34	1.95
73997--74970	214	4.5	213	85	2	1019	39	14	16	30	1.88
73997--74970	429	2.3	428	80	4	1052	39	14	16	30	1.88
75946--75972	11	2.5	11	100	0	54	11	25	0	62	1.28
76052--76275	21	10.8	21	74	13	151	21	21	6	50	1.71
76040--76250	42	5.1	41	77	14	179	21	22	6	49	1.72
76131--76215	44	1.9	44	92	0	143	20	22	5	51	1.68
76131--76282	44	3.5	44	78	9	127	21	23	5	50	1.70
76327--76797	7	65.9	7	63	15	85	19	22	2	54	1.56
76289--76400	52	2.2	50	84	7	136	20	20	2	56	1.54
76349--76804	35	12.4	35	73	18	256	19	23	2	54	1.57
76477--76646	76	2.3	75	88	1	241	19	22	2	54	1.57
76669--76804	72	1.9	72	96	0	254	16	23	2	56	1.54
76970--77476	40	12.8	39	66	18	173	26	18	6	48	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76971--77174	80	2.6	80	82	6	249	25	21	6	47	1.75
77090--77161	37	2.1	35	85	12	96	26	22	6	44	1.78
77078--77377	70	4.3	70	84	10	350	27	17	7	48	1.73
77196--77377	64	2.8	64	89	5	267	27	17	7	47	1.74
77261--77476	38	5.9	36	74	12	149	28	16	6	49	1.70
77350--77439	19	4.7	19	64	5	56	30	14	4	51	1.62
77414--77476	22	3.1	22	63	25	57	30	14	4	50	1.63
81467--81538	26	2.7	27	81	12	87	37	25	18	19	1.94
93646--93682	6	6.2	6	100	0	74	67	0	16	16	1.23
94080--94236	74	2.1	74	90	2	244	22	28	8	40	1.83
94937--94966	5	6.0	5	92	0	51	23	0	60	16	1.36
95191--95241	22	2.2	23	79	6	59	74	0	17	7	1.05

Tables:   1

The End!