Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007826.1 Corchorus capsularis cultivar CVL-1 contig07847, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24017

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4033--4093
28
2.2
28
82
5
70
52
26
11
9
1.68
4525--4579
16
3.4
16
82
9
76
58
12
1
27
1.45
4530--4579
17
3.1
17
85
8
77
58
10
2
30
1.42
4528--4644
13
8.4
13
73
18
67
58
11
0
29
1.40
4560--4640
42
1.9
43
97
2
155
59
11
0
29
1.32
6485--6572
32
2.8
32
80
5
106
39
34
10
15
1.82
6490--6572
16
5.2
16
69
11
53
38
34
10
15
1.83
6483--6595
32
3.6
32
72
9
88
42
33
7
15
1.77
8001--8196
97
2.0
99
82
11
240
35
6
11
46
1.66
9875--9907
4
8.2
4
87
12
50
48
0
0
51
1.00
12395--12424
15
1.9
16
93
6
53
30
20
23
26
1.98
15393--15444
23
2.2
23
79
3
59
30
13
7
48
1.71
21852--22063
105
2.0
106
91
1
347
47
12
15
25
1.80
22341--22401
32
1.9
32
90
3
97
29
18
3
49
1.63
22671--22854
22
8.3
22
75
11
90
33
10
19
37
1.85
22717--22800
44
1.9
44
87
0
123
35
14
15
34
1.88
23012--23060
20
2.5
20
80
6
55
46
6
10
36
1.63
23063--23281
22
9.9
22
70
13
121
42
9
13
34
1.76
23090--23281
44
4.4
45
74
13
152
43
9
12
34
1.76
23185--23254
21
3.3
20
73
13
52
44
10
12
32
1.76
23363--23429
19
3.5
19
85
2
89
41
10
22
25
1.85
23414--23888
22
22.0
21
66
15
134
39
9
13
37
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23759--23844
45
1.9
45
83
4
111
38
11
11
38
1.78

Tables:   1

The End!