Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007827.1 Corchorus capsularis cultivar CVL-1 contig07848, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66419

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82--176
46
2.1
45
98
2
181
42
6
5
46
1.51
211--338
59
2.2
59
92
1
213
56
3
23
16
1.57
3467--3510
21
2.1
21
87
8
63
18
25
9
47
1.77
3815--3881
32
2.1
32
86
5
91
13
31
43
11
1.80
3867--3949
33
2.5
33
86
1
114
12
27
40
19
1.87
5086--5118
3
11.0
3
87
12
50
66
0
0
33
0.92
10702--10754
25
2.1
25
100
0
106
43
15
3
37
1.64
13898--13998
31
3.3
31
82
8
116
39
17
8
33
1.81
14729--14859
31
4.3
31
83
3
160
19
24
22
33
1.97
16445--16481
18
2.1
18
100
0
74
51
16
5
27
1.66
26713--26751
2
19.5
2
100
0
78
51
0
0
48
1.00
38128--38178
25
2.0
25
88
0
75
41
27
7
23
1.82
41409--41447
13
3.0
13
85
14
53
84
12
2
0
0.72
45077--45131
12
4.5
12
95
4
101
34
16
23
25
1.95
45077--45131
25
2.2
24
96
3
101
34
16
23
25
1.95
48256--48318
32
2.0
32
93
0
108
55
12
22
9
1.65
50229--51060
415
2.0
415
97
0
1565
36
20
20
22
1.95
52068--52138
29
2.4
30
88
4
99
29
19
11
39
1.87
52217--52263
13
3.5
13
77
11
51
25
0
0
74
0.82
52224--52259
17
2.1
18
89
5
56
27
0
0
72
0.85
53336--53384
19
2.8
17
80
19
57
73
0
22
4
1.00
53334--53392
25
2.4
23
81
10
64
74
0
20
5
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53511--53573
29
2.1
30
85
5
83
39
7
22
30
1.82
54919--54966
17
2.8
17
75
9
53
77
10
10
2
1.09

Tables:   1

The End!