Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000783.1 Corchorus capsularis cultivar CVL-1 contig00783, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 697

Length: 1162
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.39


Found at i:351 original size:16 final size:16

Alignment explanation


    Indices: 326--367  Score: 59
    Period size: 16  Copynumber: 2.6  Consensus size: 16

        316 ATTTTCTCCA

                       *    
        326 ATTTTTGAAAAGATT-
          1 ATTTTTGAAAAAATTG

                             
        341 ATTTTTCGAAAAAATTG
          1 ATTTTT-GAAAAAATTG

                      
        358 ATTTTTGAAA
          1 ATTTTTGAAA

        368 TTGAAAATTT


Statistics
Matches: 24,  Mismatches: 1, Indels: 3
        0.86            0.04        0.11

Matches are distributed among these distances:
  15    6  0.25
  16   12  0.50
  17    6  0.25

ACGTcount: A:0.40, C:0.02, G:0.12, T:0.45


Consensus pattern (16 bp):   
ATTTTTGAAAAAATTG
Done.