Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007830.1 Corchorus capsularis cultivar CVL-1 contig07851, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53884

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40--163
33
3.7
33
75
8
117
25
41
25
7
1.80
5203--5228
12
2.2
12
100
0
52
69
23
0
7
1.14
17786--17824
20
1.9
21
84
5
53
20
17
2
58
1.50
19360--19410
25
2.1
22
77
22
57
19
1
11
66
1.33
19661--19731
36
1.9
36
91
2
115
32
11
5
50
1.61
23578--23616
20
1.9
21
84
5
53
20
17
2
58
1.50
27770--27803
2
17.0
2
100
0
68
50
0
0
50
1.00
30882--30914
6
5.5
6
96
0
57
54
12
0
33
1.37
30911--30954
12
3.5
13
84
9
65
56
9
11
22
1.62
30911--30962
25
2.1
25
86
10
72
59
9
9
21
1.57
35988--36025
19
2.1
18
90
5
58
36
7
0
55
1.29
37339--37386
22
2.1
22
81
11
53
39
2
12
45
1.54
37433--38156
124
5.8
125
84
5
779
33
12
13
39
1.83
45338--45605
138
1.9
139
87
5
400
42
7
29
20
1.80

Tables:   1

The End!