Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007831.1 Corchorus capsularis cultivar CVL-1 contig07852, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93342

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3179--3209
2
16.0
2
93
6
55
51
0
0
48
1.00
3911--3942
5
6.6
5
96
3
57
15
0
0
84
0.63
7731--7771
21
2.0
21
85
0
55
34
19
0
46
1.50
9673--9709
19
1.9
19
94
0
65
8
37
13
40
1.74
12293--12353
7
8.7
7
92
3
88
0
4
11
83
0.79
14475--14653
32
5.3
32
79
15
209
29
21
6
42
1.78
14475--14653
68
2.6
68
97
0
331
29
21
6
42
1.78
14475--14678
68
3.0
68
93
0
327
27
22
6
43
1.77
14662--14864
83
2.5
82
88
2
300
25
20
7
46
1.76
14663--14884
41
5.4
41
88
3
286
24
19
8
47
1.76
14874--15578
37
18.8
36
86
5
852
25
18
9
46
1.79
14874--15578
74
9.4
74
89
2
980
25
18
9
46
1.79
14874--15578
111
6.3
111
89
2
1007
25
18
9
46
1.79
15547--15597
27
1.9
26
88
11
77
33
17
5
43
1.73
20333--20364
2
16.0
2
100
0
64
50
50
0
0
1.00
33351--33389
21
1.9
20
94
5
69
5
25
35
33
1.78
33355--33403
21
2.3
21
85
0
62
10
30
26
32
1.89
35551--35587
18
2.1
18
89
0
56
32
10
16
40
1.83
37443--37561
59
2.0
59
86
3
168
36
21
22
19
1.95
37772--37810
15
2.6
15
100
0
78
53
7
25
12
1.65
38457--38528
35
2.1
35
100
0
144
45
11
20
22
1.82
42801--43642
419
2.0
420
94
2
1496
40
13
15
30
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51899--51945
24
2.0
24
86
0
67
34
27
23
14
1.94
52236--52271
2
18.0
2
100
0
72
50
0
0
50
1.00
52506--52568
17
3.9
16
75
10
65
7
11
42
38
1.70
52716--52822
16
6.7
16
74
8
92
5
13
29
51
1.63
52716--52805
32
2.8
32
93
0
153
4
12
31
52
1.58
54194--54230
2
18.5
2
88
0
56
51
5
0
43
1.24
54669--54725
28
2.1
27
90
3
87
29
12
17
40
1.86
64388--64430
20
2.1
21
91
4
70
44
9
0
46
1.35
64427--64484
30
2.0
29
89
3
89
44
6
1
46
1.40
64556--64607
11
4.8
10
79
11
50
51
23
13
11
1.73
66114--66175
30
2.1
30
96
0
115
6
30
40
22
1.79
71573--71599
10
2.7
10
100
0
54
11
0
0
88
0.50
72626--72708
42
2.0
42
85
0
112
12
26
37
24
1.90
73096--73137
21
2.0
21
85
0
57
28
28
11
30
1.92
79314--79344
1
31.0
1
100
0
62
100
0
0
0
0.00
80902--81013
52
2.2
51
85
4
147
57
8
2
31
1.44
83513--83575
29
2.2
29
88
0
90
34
23
9
31
1.87
87216--87366
76
2.0
77
93
1
259
25
9
12
52
1.68
87239--87396
76
2.1
75
81
7
176
26
9
13
50
1.73
87734--87860
56
2.2
60
86
8
174
35
29
15
18
1.93
87777--87881
30
3.5
30
77
16
101
38
30
14
17
1.89
87751--87881
60
2.3
56
84
7
165
38
29
14
17
1.90

Tables:   1

The End!