Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007841.1 Corchorus capsularis cultivar CVL-1 contig07862, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42600

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
639--682
15
2.9
15
86
3
61
38
38
15
6
1.75
3724--3777
22
2.5
21
75
16
56
42
1
9
46
1.46
3860--4044
22
8.5
22
67
8
76
38
16
10
34
1.83
4039--4190
22
7.0
21
77
12
82
35
17
6
40
1.76
4039--4199
44
3.7
44
73
16
106
36
17
6
39
1.76
4303--4364
22
2.8
21
70
4
52
40
16
4
38
1.69
4727--4775
21
2.3
21
78
3
53
30
30
8
30
1.86
5248--5285
10
3.9
10
83
16
53
52
0
15
31
1.43
15613--15708
38
2.6
37
80
6
104
17
19
6
56
1.62
16031--16159
22
5.9
22
71
13
104
37
10
14
37
1.82
16032--16159
44
2.9
44
84
4
152
37
10
14
36
1.82
16028--16159
66
2.0
66
80
5
151
37
10
15
37
1.82
16166--16214
22
2.2
22
85
7
64
24
2
24
48
1.61
16250--16619
22
16.7
21
69
14
142
39
10
16
34
1.82
16373--16643
22
12.4
22
73
12
168
42
10
13
33
1.78
16725--16776
20
2.6
20
93
0
86
42
13
17
26
1.86
16725--17036
22
14.6
21
69
14
113
40
9
15
34
1.80
16745--16906
44
3.7
44
80
9
138
40
9
16
33
1.81
16850--16964
60
1.9
61
83
1
151
43
7
14
33
1.75
16932--17002
23
3.1
23
81
0
88
39
7
16
36
1.76
17085--17140
22
2.5
22
82
2
67
30
12
19
37
1.89
17085--17148
22
2.9
22
80
2
65
31
12
17
39
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17086--17171
45
1.9
45
80
4
102
33
12
16
37
1.87
17136--17213
22
3.5
22
76
11
79
37
12
15
34
1.86
17441--17466
2
13.0
2
100
0
52
50
0
0
50
1.00
17468--17583
22
5.2
21
81
8
106
31
8
20
39
1.83
17619--17987
22
16.7
21
68
15
133
38
10
16
34
1.83
17781--18011
22
10.5
22
70
10
123
41
9
13
34
1.78
17865--18011
44
3.4
44
74
11
140
44
9
12
34
1.74
18093--18143
20
2.5
20
96
0
93
43
11
17
27
1.84
18093--18689
44
13.9
44
68
13
244
38
9
16
35
1.81
18322--18428
23
4.7
23
82
9
114
37
8
14
40
1.76
18093--18560
22
21.9
22
70
15
191
37
9
16
36
1.81
18490--18686
22
9.0
22
67
7
87
37
11
17
34
1.85
21329--21369
21
2.0
21
85
0
55
48
7
17
26
1.73
21299--21378
22
3.7
22
72
3
63
47
7
15
30
1.72
21583--21607
2
12.5
2
100
0
50
52
0
0
48
1.00
24688--24732
13
2.9
17
71
25
53
31
6
11
51
1.63
24676--24732
30
1.9
30
96
3
107
29
7
10
52
1.62
42214--42254
20
2.0
22
85
9
59
12
7
19
60
1.54

Tables:   1

The End!