Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007845.1 Corchorus capsularis cultivar CVL-1 contig07866, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4463
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33


Found at i:2798 original size:13 final size:13

Alignment explanation


    Indices: 2780--2807  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

       2770 ACTTTTTCGG

                         
       2780 AAAAAAAAAAACA
          1 AAAAAAAAAAACA

                         
       2793 AAAAAAAAAAACA
          1 AAAAAAAAAAACA

              
       2806 AA
          1 AA

       2808 TTTACAACAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00


Consensus pattern (13 bp):   
AAAAAAAAAAACA

Found at i:3528 original size:15 final size:15

Alignment explanation


    Indices: 3508--3537  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       3498 TCCATTTTAT

                           
       3508 TAACTTTCTTGGTTA
          1 TAACTTTCTTGGTTA

                           
       3523 TAACTTTCTTGGTTA
          1 TAACTTTCTTGGTTA

       3538 ATGATTGTTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.20, C:0.13, G:0.13, T:0.53


Consensus pattern (15 bp):   
TAACTTTCTTGGTTA
Done.