Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007847.1 Corchorus capsularis cultivar CVL-1 contig07868, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66059

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
530--591
28
2.2
28
88
8
99
9
27
6
56
1.56
846--887
22
2.0
20
86
13
59
35
0
23
40
1.55
846--899
22
2.5
21
80
14
58
35
0
25
38
1.57
969--1013
22
2.1
21
87
4
63
40
8
33
17
1.81
8845--8875
5
6.2
5
100
0
62
19
41
19
19
1.90
12546--12916
157
2.4
154
79
8
405
30
14
19
36
1.91
13435--13489
20
2.7
21
85
5
85
30
29
14
25
1.95
14694--14719
2
13.0
2
100
0
52
50
0
0
50
1.00
18601--18639
9
4.2
9
87
6
51
71
2
25
0
0.98
19730--19884
54
3.0
53
85
6
201
28
10
30
30
1.90
29121--29170
25
2.0
25
88
7
75
42
10
6
42
1.63
38891--38947
28
2.0
28
100
0
114
35
14
17
33
1.90
42688--42715
12
2.3
12
100
0
56
50
32
17
0
1.47
46484--46547
32
2.0
32
93
0
110
29
18
18
32
1.95
47498--47733
105
2.3
104
87
0
346
30
19
18
31
1.96
50472--50497
13
2.0
13
100
0
52
15
7
15
61
1.55
53749--53813
20
3.2
20
82
2
85
35
21
7
35
1.82
57692--57751
19
3.1
18
83
11
66
51
0
1
46
1.10
57705--57746
21
2.0
21
85
0
57
59
0
0
40
0.97
58476--58522
18
2.5
20
73
16
55
44
0
6
48
1.28
59701--59790
45
2.0
45
93
0
153
16
11
21
51
1.75
60205--60263
31
1.9
31
85
0
82
23
15
30
30
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64098--64139
5
8.4
5
97
0
66
76
0
23
0
0.79
64991--65060
35
2.0
34
86
2
95
48
11
17
22
1.79

Tables:   1

The End!