Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007848.1 Corchorus capsularis cultivar CVL-1 contig07869, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57219

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
867--904
2
19.0
2
100
0
76
50
0
0
50
1.00
4654--4693
21
2.0
20
90
5
62
32
20
27
20
1.97
5512--5556
21
2.1
22
84
12
58
13
57
6
22
1.59
8153--8187
12
2.9
12
86
0
52
77
0
17
5
0.96
23920--23962
20
2.2
20
100
0
86
18
32
9
39
1.83
41353--41425
29
2.5
29
93
0
128
23
12
19
45
1.84
41707--41775
33
2.1
33
83
0
84
14
34
5
44
1.69
44841--44902
30
2.1
30
90
0
97
35
24
17
22
1.95
44825--44898
15
4.9
15
69
12
62
35
21
18
24
1.96
46790--47649
50
17.4
49
85
4
904
36
18
27
17
1.93
46784--47649
49
17.6
49
83
6
760
36
18
27
17
1.93
46790--47649
198
4.4
197
83
4
929
36
18
27
17
1.93
48299--48425
50
2.5
51
92
1
202
38
21
0
39
1.59
52954--53035
40
2.0
40
100
0
164
43
14
19
21
1.87
53080--53129
25
2.0
25
84
7
66
18
18
20
44
1.88
56906--57137
102
2.3
98
83
8
290
40
10
9
38
1.73

Tables:   1

The End!