Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007851.1 Corchorus capsularis cultivar CVL-1 contig07872, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53049

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6596--6622
3
9.0
3
100
0
54
66
0
33
0
0.92
16134--16158
11
2.3
11
100
0
50
20
0
20
60
1.37
17995--18046
24
2.1
26
82
7
63
23
0
34
42
1.54
24159--24200
20
2.1
20
86
8
59
54
7
9
28
1.59
26334--26375
21
2.0
22
85
4
59
21
40
7
30
1.80
29129--29168
18
2.2
19
86
4
55
45
10
17
27
1.80
42419--42451
17
1.9
17
93
0
57
27
3
12
57
1.49
44348--44594
122
2.0
122
100
0
494
29
8
11
49
1.70
45937--45968
2
16.0
2
100
0
64
50
0
0
50
1.00
48233--48312
18
4.4
18
79
14
92
33
8
28
28
1.87
49576--49613
18
2.1
19
90
5
60
47
18
10
23
1.79
52014--52038
10
2.5
10
100
0
50
48
20
8
24
1.76

Tables:   1

The End!