genome.fa.s7859.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007859.1 Corchorus capsularis cultivar CVL-1 contig07880, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53415

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183--237	21	2.6	21	83	11	60	56	5	5	32	1.45
910--1054	33	4.5	33	81	6	136	19	40	25	14	1.89
903--1061	32	4.9	32	82	7	160	18	40	27	13	1.89
903--1038	65	2.1	65	83	5	168	19	39	26	14	1.90
1127--1221	33	2.9	33	82	3	93	12	29	43	14	1.83
6954--7050	22	4.3	24	78	11	84	42	8	13	36	1.74
6972--7040	23	3.0	23	81	10	88	39	7	14	39	1.74
6946--7050	45	2.3	46	76	12	119	43	7	14	34	1.74
7091--7163	22	3.3	22	80	0	92	38	12	15	34	1.84
7091--7187	44	2.2	44	84	0	131	37	13	14	35	1.85
7108--7190	22	3.8	22	79	6	96	36	13	13	37	1.83
16325--16385	29	2.1	30	84	3	79	39	3	6	50	1.45
18109--18170	31	2.0	31	93	0	106	40	4	17	37	1.71
19198--19237	21	1.9	21	94	0	71	45	20	10	25	1.81
19601--19638	11	3.5	11	85	10	51	57	2	0	39	1.12
19639--19677	19	2.1	19	85	0	51	28	7	20	43	1.79
20305--20343	17	2.2	17	86	4	51	28	0	7	64	1.21
20311--20345	17	2.1	17	94	0	61	20	0	8	71	1.11
20392--20416	2	12.5	2	100	0	50	52	0	0	48	1.00
23177--23204	2	14.0	2	100	0	56	50	0	0	50	1.00
27399--27932	155	3.4	155	78	8	584	33	20	14	31	1.93
29100--29144	16	2.9	16	83	3	56	33	26	17	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30144--30180	15	2.5	15	100	0	74	21	5	43	29	1.75
36984--37072	29	3.1	29	100	0	178	58	10	0	31	1.31
40084--40121	14	2.8	13	92	8	58	86	10	2	0	0.66
40298--40459	80	2.0	82	90	2	256	48	19	7	24	1.74
41028--41396	107	3.5	107	94	0	616	40	8	8	41	1.67
45103--45148	23	2.0	23	95	0	83	34	32	8	23	1.86
50754--50852	44	2.2	44	87	3	137	36	16	16	31	1.91
50707--50860	66	2.3	65	82	6	168	35	13	16	34	1.89
50768--50860	44	2.1	44	92	4	152	35	15	16	33	1.89
50710--50907	22	8.9	22	78	11	111	34	12	17	35	1.87
50953--51009	24	2.5	22	83	8	69	38	12	17	31	1.87
50953--51076	22	5.5	23	71	15	73	37	10	17	34	1.84
50968--51210	22	10.8	22	67	20	78	40	9	15	34	1.79
51095--51340	22	11.3	22	67	14	66	42	8	13	34	1.75
51446--51512	19	3.5	19	85	2	89	41	11	20	25	1.87
51503--51584	22	3.8	21	80	6	92	40	9	12	37	1.76
51502--51644	44	3.3	43	78	9	123	43	9	13	32	1.78
51548--51644	22	4.5	22	76	7	83	45	10	14	29	1.78
51506--51631	43	2.9	43	79	10	123	43	9	15	30	1.79
51649--51728	23	3.5	23	77	1	81	40	5	13	41	1.67
51846--52039	22	8.9	22	67	9	74	41	10	13	34	1.79
52242--52298	22	2.6	22	97	0	105	40	7	10	42	1.66

Tables:   1

The End!