Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007864.1 Corchorus capsularis cultivar CVL-1 contig07885, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37607

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1578--4505
974
3.0
975
97
0
5536
32
22
15
29
1.95
5084--5110
7
3.9
7
100
0
54
29
44
11
14
1.80
22052--22653
22
27.9
22
68
14
231
36
15
9
38
1.80
22357--22441
23
3.8
22
81
6
91
37
12
7
42
1.71
22318--22441
45
2.8
45
80
10
130
37
13
8
39
1.76
22633--22712
34
2.4
34
95
2
144
37
22
8
31
1.85
22726--22777
22
2.4
22
90
3
88
36
11
7
44
1.70
25940--25992
27
2.0
27
85
7
72
54
7
7
30
1.56
26010--26038
12
2.3
13
94
5
51
0
17
0
82
0.66
27498--27656
22
7.4
21
72
20
100
35
11
8
44
1.73
27495--27638
21
6.6
22
72
19
90
35
12
8
43
1.73
27678--27795
22
5.4
22
77
8
114
35
18
9
36
1.83
28343--28407
30
2.1
31
94
2
114
47
4
20
27
1.69
28765--28802
2
18.5
2
89
5
58
50
0
2
47
1.15
29257--29371
59
1.9
59
79
10
128
40
7
17
33
1.78
30079--30311
70
3.2
70
84
10
306
37
12
0
48
1.45
30079--30317
78
3.2
77
90
7
359
37
12
0
49
1.44
31418--31451
17
2.0
17
88
0
50
20
2
61
14
1.46

Tables:   1

The End!