Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007870.1 Corchorus capsularis cultivar CVL-1 contig07891, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5703
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29


Found at i:756 original size:10 final size:10

Alignment explanation


    Indices: 719--757  Score: 51
    Period size: 10  Copynumber: 3.8  Consensus size: 10

        709 TCATTCAAAA

                 *    
        719 TATAAGAACC
          1 TATAACAACC

                     *
        729 TATAACAACA
          1 TATAACAACC

                       
        739 TAATAACAACC
          1 T-ATAACAACC

                    
        750 TATAACAA
          1 TATAACAA

        758 TAAGAAAGAG


Statistics
Matches: 25,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  10   16  0.64
  11    9  0.36

ACGTcount: A:0.56, C:0.21, G:0.03, T:0.21


Consensus pattern (10 bp):   
TATAACAACC

Found at i:4474 original size:10 final size:10

Alignment explanation


    Indices: 4459--4488  Score: 51
    Period size: 10  Copynumber: 3.0  Consensus size: 10

       4449 TCCAAGCCTA

                      
       4459 TTGATTATTC
          1 TTGATTATTC

                      
       4469 TTGATTATTC
          1 TTGATTATTC

                *     
       4479 TTGAATATTC
          1 TTGATTATTC

       4489 CATCAATGCA


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  10   19  1.00

ACGTcount: A:0.23, C:0.10, G:0.10, T:0.57


Consensus pattern (10 bp):   
TTGATTATTC
Done.