Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007873.1 Corchorus capsularis cultivar CVL-1 contig07894, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 21660
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34


Found at i:4293 original size:22 final size:21

Alignment explanation


    Indices: 4262--4307  Score: 58
    Period size: 22  Copynumber: 2.1  Consensus size: 21

       4252 ATCGGTTTGG

                        *         
       4262 TTTTAACTATA-TATTATATAA
          1 TTTTAACTATACCA-TATATAA

                                  
       4283 TTTTAAACTATACCATATATAA
          1 TTTT-AACTATACCATATATAA

               
       4305 TTT
          1 TTT

       4308 CAGAATAATA


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  21    4  0.18
  22   17  0.77
  23    1  0.05

ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50


Consensus pattern (21 bp):   
TTTTAACTATACCATATATAA
Done.