Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007876.1 Corchorus capsularis cultivar CVL-1 contig07897, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30398

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
607--1262
343
1.9
338
83
6
837
39
13
9
38
1.76
1769--1805
3
12.3
3
100
0
74
32
0
0
67
0.91
5027--5057
9
3.3
9
95
4
53
45
3
9
41
1.53
15540--15584
21
2.1
22
83
4
56
17
35
8
37
1.81
19954--20025
35
2.1
35
97
0
135
48
12
2
36
1.56
20166--20227
30
2.1
30
93
0
106
46
6
0
46
1.28
24451--24525
29
2.8
28
78
13
77
1
24
0
74
0.89
24451--24510
23
2.5
24
83
5
68
1
18
0
80
0.80
24480--24515
18
1.9
19
88
5
56
0
25
0
75
0.81
24454--24516
20
2.9
21
80
15
65
1
20
0
77
0.85
24482--24519
15
2.5
16
87
12
62
0
26
0
73
0.83
25921--25970
3
16.7
3
100
0
100
68
0
0
32
0.90

Tables:   1

The End!