Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007878.1 Corchorus capsularis cultivar CVL-1 contig07899, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84010

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4011--4043
9
3.6
9
95
4
57
87
0
0
12
0.53
4011--4045
10
3.6
10
88
7
54
85
0
0
14
0.59
5424--5528
33
3.2
32
81
5
129
24
9
20
45
1.80
5477--5563
33
2.6
34
83
7
99
28
8
20
42
1.80
5554--5692
33
4.3
33
93
2
230
25
10
20
44
1.82
6035--6093
30
2.0
30
83
6
75
30
16
27
25
1.97
14058--14103
15
3.1
15
74
0
56
76
2
6
15
1.09
23605--23639
7
5.1
7
96
3
63
57
14
11
17
1.66
23874--23899
2
13.0
2
100
0
52
50
0
0
50
1.00
26538--26787
108
2.4
103
83
7
312
40
7
8
43
1.63
26538--26795
101
2.5
102
83
6
324
40
7
8
43
1.63
26850--26880
2
16.0
2
93
6
55
48
0
0
51
1.00
26851--26884
12
3.1
11
91
8
52
44
0
0
55
0.99
30347--30650
30
9.6
31
81
10
253
34
17
17
30
1.93
30434--30618
100
1.9
100
87
0
271
34
17
17
31
1.93
32642--32722
39
2.1
39
97
0
153
45
18
19
16
1.85
32733--32796
33
1.9
33
83
0
83
31
25
20
23
1.98
40836--40865
6
5.0
6
91
0
51
33
20
0
46
1.51
44072--44115
22
2.0
22
86
0
61
25
25
22
27
2.00
44067--44167
52
1.9
52
95
0
184
25
24
26
22
2.00
58338--58424
42
2.1
42
93
0
147
9
26
44
19
1.80
63823--63859
10
3.6
10
88
3
56
13
0
2
83
0.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63825--63859
9
3.8
9
88
7
52
11
0
2
85
0.69
64879--64944
30
2.2
30
91
0
105
9
24
43
22
1.82
72823--72862
19
2.2
18
86
4
53
30
20
5
45
1.72
81717--81749
6
5.5
6
100
0
66
54
15
0
30
1.41
81746--81790
13
3.5
13
90
3
74
55
8
13
22
1.65
81746--81798
25
2.1
25
89
6
81
58
9
11
20
1.60

Tables:   1

The End!