Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000788.1 Corchorus capsularis cultivar CVL-1 contig00788, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 929

Length: 1549
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.28


Found at i:505 original size:15 final size:15

Alignment explanation


    Indices: 487--517  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        477 AAAATCCTAA

                *          
        487 AAAAGAAAGAAAAAT
          1 AAAACAAAGAAAAAT

                           
        502 AAAACAAAGAAAAAT
          1 AAAACAAAGAAAAAT

             
        517 A
          1 A

        518 TTATGGGTTA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.81, C:0.03, G:0.10, T:0.06


Consensus pattern (15 bp):   
AAAACAAAGAAAAAT
Done.