Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007883.1 Corchorus capsularis cultivar CVL-1 contig07904, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21487

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4978--5030
14
3.7
14
78
16
56
50
3
0
45
1.19
4928--5166
121
2.0
118
86
4
336
37
9
7
46
1.64
5421--5548
44
2.9
44
88
4
170
36
10
15
37
1.81
5418--5549
66
2.0
66
85
2
176
35
9
16
37
1.82
5418--5603
22
8.4
22
75
8
146
33
9
18
39
1.82
5639--5736
22
4.5
21
75
14
83
35
9
20
34
1.84
5897--5935
20
2.0
20
89
0
60
53
12
2
30
1.52
6824--6850
14
1.9
14
100
0
54
37
0
44
18
1.50
9283--9463
47
3.9
46
83
5
222
36
20
23
19
1.95
9286--9463
92
1.9
91
88
1
266
37
20
24
17
1.94
9573--10074
69
7.2
70
78
7
540
27
18
27
25
1.98
9573--10074
139
3.6
139
94
1
848
27
18
27
25
1.98
10902--10952
13
3.7
14
84
12
61
3
23
0
72
1.01
11317--11351
17
2.1
17
89
5
54
0
31
0
68
0.90
11689--11827
44
3.1
43
85
6
179
38
20
7
33
1.82
11837--11916
11
6.8
11
73
26
51
1
27
0
71
0.94
11856--11924
27
2.7
26
80
6
77
2
21
0
75
0.93
11838--11914
18
4.1
18
72
22
59
1
25
0
72
0.92
11855--11925
13
5.5
12
75
12
61
2
21
0
76
0.92
12301--12450
74
2.0
76
81
2
178
29
22
9
38
1.85
18505--18543
20
2.0
20
89
0
60
53
12
2
30
1.52

Tables:   1

The End!