Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007885.1 Corchorus capsularis cultivar CVL-1 contig07906, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 22552
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:5371 original size:33 final size:33

Alignment explanation


    Indices: 5318--5392  Score: 96
    Period size: 33  Copynumber: 2.3  Consensus size: 33

       5308 GTGTTTTAGA

                  *   *    *              *  
       5318 TGTTGTGTGCGATGATACTAAACCTGATTTGAG
          1 TGTTGTTTGCAATGACACTAAACCTGATTTAAG

                                  *   *      
       5351 TGTTGTTTGCAATGACACTAAATCTGCTTTAAG
          1 TGTTGTTTGCAATGACACTAAACCTGATTTAAG

                     
       5384 TGTTGTTTG
          1 TGTTGTTTG

       5393 TGACAAAACT


Statistics
Matches: 36,  Mismatches: 6, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  33   36  1.00

ACGTcount: A:0.23, C:0.12, G:0.24, T:0.41


Consensus pattern (33 bp):   
TGTTGTTTGCAATGACACTAAACCTGATTTAAG

Found at i:7349 original size:33 final size:33

Alignment explanation


    Indices: 7322--7420  Score: 126
    Period size: 33  Copynumber: 3.0  Consensus size: 33

       7312 GGCCACATGA

                  *            *             
       7322 CTCGGAGATGCCCGGCCACCACCGGCCACATGA
          1 CTCGGACATGCCCGGCCACAACCGGCCACATGA

               * *      *                    
       7355 CTCAGCCATGCCTGGCCACAACCGGCCACATGA
          1 CTCGGACATGCCCGGCCACAACCGGCCACATGA

                 *          *      *         
       7388 CTCGGTCATGCCCGGCTACAACCAGCCACATGA
          1 CTCGGACATGCCCGGCCACAACCGGCCACATGA

       7421 TCCTTTAACT


Statistics
Matches: 56,  Mismatches: 10, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  33   56  1.00

ACGTcount: A:0.23, C:0.41, G:0.23, T:0.12


Consensus pattern (33 bp):   
CTCGGACATGCCCGGCCACAACCGGCCACATGA
Done.