genome.fa.s7888.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007888.1 Corchorus capsularis cultivar CVL-1 contig07909, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72954

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10091--10136	21	2.2	21	88	7	67	30	6	23	39	1.80
18270--18332	28	2.4	28	86	7	96	26	15	17	39	1.90
18572--18601	1	30.0	1	100	0	60	100	0	0	0	0.00
19785--19862	29	2.7	28	77	15	86	39	29	14	16	1.88
24682--24729	21	2.4	19	86	6	60	50	12	37	0	1.41
26245--26269	8	3.1	8	100	0	50	40	24	12	24	1.88
27219--27255	2	18.5	2	100	0	74	51	0	0	48	1.00
28104--28336	70	3.2	70	82	10	288	36	13	0	49	1.48
28104--28342	78	3.2	78	90	5	352	35	12	0	50	1.47
28431--28591	60	2.7	60	88	1	225	35	17	19	27	1.94
28483--28572	29	3.0	30	68	11	76	32	20	20	27	1.97
28491--28591	31	3.3	31	72	10	109	35	19	19	24	1.95
28624--28725	31	3.4	30	74	20	113	24	18	18	38	1.93
28655--28754	29	3.4	28	72	20	87	29	19	17	35	1.94
28624--28785	60	2.7	59	89	3	236	27	19	17	35	1.94
28625--28789	31	5.5	29	69	18	106	27	19	17	35	1.94
43913--43959	22	2.2	22	84	3	60	40	21	12	25	1.89
44781--44862	41	2.0	41	100	0	164	31	9	21	36	1.86
47517--47558	20	2.0	21	90	4	68	26	19	21	33	1.97
47401--47801	198	2.0	197	99	0	793	25	14	18	40	1.90
47715--47756	20	2.0	21	90	4	68	26	19	21	33	1.97
47824--47911	44	2.0	44	97	0	167	32	9	26	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52037--52110	37	2.0	37	100	0	148	48	8	16	27	1.74
59058--59201	76	1.9	73	90	4	225	27	2	25	45	1.65
59853--59898	5	9.2	5	86	9	67	78	0	21	0	0.76
59891--59933	14	3.1	14	80	9	52	65	0	27	6	1.18
60237--60280	24	1.9	24	86	9	65	43	13	4	38	1.65
64236--64298	24	2.6	24	97	0	117	34	11	30	23	1.90
64285--64312	14	2.0	14	100	0	56	42	7	35	14	1.73
67255--67297	16	2.5	18	81	7	54	48	0	9	41	1.35
67464--67711	123	2.0	123	84	1	318	33	11	17	37	1.85
68799--68865	22	3.0	22	74	22	77	41	4	7	46	1.52
70930--71256	162	2.0	162	94	2	577	29	20	22	27	1.98

Tables:   1

The End!