Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007889.1 Corchorus capsularis cultivar CVL-1 contig07910, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36618

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1123--1258
69
2.0
69
97
0
254
27
17
5
48
1.70
1139--1250
35
3.2
35
71
16
115
27
18
6
47
1.73
1303--1366
31
2.1
31
100
0
128
43
23
9
23
1.82
8229--8349
60
2.0
60
91
0
197
30
5
19
43
1.75
13020--13089
15
4.5
16
75
7
63
51
28
10
10
1.67
13011--13077
15
4.3
15
75
5
53
55
23
8
11
1.64
13329--13383
16
3.4
16
76
0
65
38
29
9
23
1.85
13318--13383
32
2.1
32
94
0
114
37
28
10
22
1.88
13377--13470
39
2.4
39
87
0
125
40
29
11
18
1.86
18048--18089
12
3.4
12
90
3
66
52
30
16
0
1.44
25045--25078
13
2.6
13
90
0
50
85
0
14
0
0.60
33237--33266
2
15.0
2
100
0
60
50
0
0
50
1.00
36437--36480
21
2.1
21
91
0
70
22
29
11
36
1.89
36479--36523
15
2.9
16
80
16
58
17
28
2
51
1.58

Tables:   1

The End!