Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007891.1 Corchorus capsularis cultivar CVL-1 contig07912, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66843

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
448--476
2
14.5
2
100
0
58
48
0
0
51
1.00
1556--1663
47
2.3
47
98
0
207
30
21
23
25
1.99
3581--4683
47
23.4
46
69
12
324
38
20
19
21
1.94
4000--4396
48
8.3
49
68
10
158
40
20
17
20
1.91
4040--4356
143
2.2
143
93
1
537
40
20
17
22
1.91
4040--4408
143
2.6
140
85
6
490
40
20
17
21
1.92
4324--4448
45
2.7
49
80
7
143
41
22
16
19
1.90
4474--4735
94
2.8
94
78
6
282
35
20
21
22
1.96
6621--6650
4
7.8
4
92
7
53
50
0
0
50
1.00
8246--8345
31
3.2
31
89
0
128
22
23
23
32
1.98
8240--8366
62
2.1
61
80
1
137
21
20
22
36
1.95
11006--11032
2
13.5
2
100
0
54
48
0
0
51
1.00
12830--12886
16
3.5
16
78
4
60
50
1
38
8
1.44
13316--13406
26
3.7
24
81
10
96
51
16
14
17
1.76
13656--13708
15
3.5
15
77
10
63
3
43
1
50
1.30
18409--18446
2
19.0
2
100
0
76
50
0
0
50
1.00
19513--19568
24
2.3
24
84
0
76
16
30
25
28
1.96
24985--25163
86
2.1
86
97
1
342
28
20
22
28
1.99
40928--40973
23
2.0
23
83
4
58
34
6
21
36
1.80
43498--43537
21
1.9
21
84
0
53
12
30
2
55
1.50
58427--58637
108
2.0
108
95
1
379
38
14
18
27
1.91
61570--61618
14
3.4
14
72
5
53
38
24
12
24
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61573--61630
29
2.0
29
100
0
116
37
27
10
24
1.88

Tables:   1

The End!