Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007892.1 Corchorus capsularis cultivar CVL-1 contig07913, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2188
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.27


Found at i:109 original size:29 final size:27

Alignment explanation


    Indices: 35--114  Score: 106
    Period size: 27  Copynumber: 2.9  Consensus size: 27

         25 ATTAGAGTCG

                                   *   
         35 CCCAGGGGCATTTTGGTCATTTTCGCA
          1 CCCAGGGGCATTTTGGTCATTTTTGCA

                         *             
         62 CCCAGGGGCATTTCGGTCATTTTTGCA
          1 CCCAGGGGCATTTTGGTCATTTTTGCA

             *              *         
         89 CTCAGGAGGGCATTTTAGTCATTTTT
          1 CCCA-G-GGGCATTTTGGTCATTTTT

        115 TTTAAGATCA


Statistics
Matches: 46,  Mismatches: 5, Indels: 2
        0.87            0.09        0.04

Matches are distributed among these distances:
  27   28  0.61
  28    1  0.02
  29   17  0.37

ACGTcount: A:0.16, C:0.23, G:0.25, T:0.36


Consensus pattern (27 bp):   
CCCAGGGGCATTTTGGTCATTTTTGCA
Done.