Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007893.1 Corchorus capsularis cultivar CVL-1 contig07914, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20288

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
672--840
47
3.4
46
80
12
158
45
12
20
21
1.84
745--836
29
3.3
29
66
25
88
43
14
19
22
1.87
721--906
55
3.4
55
91
2
275
50
10
16
22
1.76
734--818
26
3.2
26
64
26
68
49
11
18
20
1.78
1130--1168
14
2.8
14
84
0
51
51
2
23
23
1.61
1144--1271
35
3.6
35
87
2
157
54
2
24
18
1.55
1245--1293
21
2.3
21
82
6
64
57
2
24
16
1.50
1277--1306
15
1.9
16
93
6
53
60
0
23
16
1.36
1330--1479
22
6.6
22
75
15
119
54
6
19
20
1.65
1367--1422
15
3.9
15
74
9
62
57
5
21
16
1.59
1245--1479
95
2.5
96
77
11
218
54
5
20
19
1.62
7008--7197
95
2.0
95
100
0
380
31
21
16
30
1.95
9482--9511
6
5.0
6
95
0
51
16
3
16
63
1.44
9743--9812
24
3.0
24
79
12
83
24
12
17
45
1.83
20184--20288
33
3.2
33
83
2
140
25
9
19
45
1.80

Tables:   1

The End!