Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007894.1 Corchorus capsularis cultivar CVL-1 contig07915, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49777

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6270--6315
12
3.8
12
91
0
74
45
0
2
52
1.13
6382--6420
11
3.5
11
92
0
69
2
33
0
64
1.08
8307--8341
17
2.1
17
100
0
70
68
0
0
31
0.90
9798--9833
19
1.9
18
88
5
54
44
30
8
16
1.77
15161--15185
2
12.5
2
100
0
50
0
0
48
52
1.00
15469--15739
100
2.7
100
93
4
456
27
16
18
37
1.92
20903--20937
17
2.0
18
94
5
63
22
0
20
57
1.41
22971--22997
2
13.5
2
100
0
54
51
0
0
48
1.00
27240--27282
2
23.0
2
86
13
65
46
0
0
53
1.00
27929--27959
15
2.1
15
93
0
53
16
6
16
61
1.54
34290--34323
16
2.1
16
88
0
50
2
14
0
82
0.79
39455--39492
20
1.9
20
94
0
67
47
13
15
23
1.81
40054--40079
13
2.0
13
100
0
52
15
0
0
84
0.62
45765--45899
20
6.7
20
68
18
82
48
0
0
50
1.06
45766--45937
88
1.9
92
86
11
248
48
0
1
50
1.08
45764--45899
2
74.5
2
68
17
55
48
0
0
50
1.05
45800--45937
46
3.1
44
76
12
156
48
0
1
50
1.09
46801--46852
25
2.2
22
83
10
59
69
1
23
5
1.20

Tables:   1

The End!