Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007897.1 Corchorus capsularis cultivar CVL-1 contig07918, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83689

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37--285
90
2.8
89
84
7
303
25
16
26
31
1.96
3654--3689
6
6.2
6
87
6
56
0
30
0
69
0.89
9331--9386
26
2.2
26
90
0
85
37
5
21
35
1.76
9357--9850
35
13.7
35
81
9
492
38
7
17
35
1.79
9594--9634
21
2.0
21
85
0
55
46
4
12
36
1.63
9697--9727
16
1.9
16
93
0
53
45
3
12
38
1.59
14645--14714
34
2.0
35
84
15
92
54
17
5
22
1.64
15574--15659
32
2.7
31
89
5
120
26
24
13
34
1.93
15627--15730
28
3.6
28
75
15
86
28
31
13
25
1.94
16569--16613
21
2.1
21
84
8
56
48
4
0
46
1.22
16930--16990
29
2.0
31
84
6
81
32
16
4
45
1.68
16930--16990
31
2.0
31
84
6
81
32
16
4
45
1.68
18313--18350
19
2.0
20
85
15
53
28
5
2
63
1.30
18514--18675
22
7.3
22
81
5
112
32
9
18
39
1.83
18611--18693
22
3.5
24
76
15
66
32
6
16
44
1.72
18707--18748
22
2.0
22
86
13
61
42
9
19
28
1.82
18752--18849
22
4.5
21
73
13
74
36
7
19
36
1.79
18889--19095
22
9.3
23
74
13
134
42
9
14
33
1.78
18910--19123
44
4.8
45
75
11
160
42
10
14
33
1.79
18954--19082
66
2.0
66
82
3
161
41
10
14
34
1.80
18936--19101
66
2.5
64
75
12
149
41
10
14
33
1.80
19207--19258
20
2.6
20
96
0
95
44
11
17
26
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19207--19540
22
15.5
22
73
12
160
41
8
14
35
1.77
19437--19520
23
3.7
23
85
1
116
38
8
14
39
1.76
19679--19726
21
2.2
22
85
3
62
54
2
14
29
1.52
20178--20298
33
3.7
33
79
0
134
18
30
28
22
1.97
20179--20309
66
2.0
66
84
0
172
18
29
31
20
1.96
20406--20452
24
2.0
24
86
0
67
17
36
21
25
1.94
20430--20541
33
3.4
33
86
0
143
20
30
30
18
1.97
26450--26521
7
10.6
7
82
14
89
2
0
13
83
0.76
26445--26511
18
3.5
18
81
18
82
2
0
13
83
0.76
26442--26523
24
3.5
22
80
14
94
2
0
15
81
0.79
29030--29084
2
27.5
2
82
14
69
47
0
5
47
1.25
29030--29080
20
2.5
20
93
0
93
47
0
5
47
1.26
39050--39083
9
3.7
9
88
4
50
79
0
11
8
0.94
39050--39084
10
3.6
10
84
7
54
80
0
11
8
0.92
39049--39098
19
2.8
18
85
11
68
78
0
16
6
0.95
39079--39118
14
2.9
13
85
7
53
77
0
22
0
0.77
39558--39607
22
2.2
22
82
3
55
64
4
26
6
1.35
42754--42813
30
2.0
30
90
0
93
18
25
20
36
1.94
50705--50734
15
2.0
15
93
0
51
70
0
10
20
1.16
67427--67508
27
3.1
25
72
18
67
20
14
24
40
1.90
67764--67807
21
2.1
21
100
0
88
27
9
15
47
1.76
68933--68962
15
2.0
15
93
0
51
33
23
26
16
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70577--70614
19
2.1
18
90
5
58
39
21
0
39
1.53
73443--73491
21
2.3
21
78
3
53
55
8
10
26
1.61
74972--75057
42
2.0
42
97
0
163
33
15
24
26
1.95

Tables:   1

The End!