Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007898.1 Corchorus capsularis cultivar CVL-1 contig07919, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 957

Length: 1595
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30


Found at i:746 original size:10 final size:10

Alignment explanation


    Indices: 731--768  Score: 67
    Period size: 10  Copynumber: 3.7  Consensus size: 10

        721 TCTGGTCGAA

                      
        731 ATTTTTTTTT
          1 ATTTTTTTTT

                      
        741 ATTTTTTTTT
          1 ATTTTTTTTT

                       
        751 ATTTTTTTTAT
          1 ATTTTTTTT-T

                   
        762 ATTTTTT
          1 ATTTTTT

        769 GATATAACTA


Statistics
Matches: 27,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  10   19  0.70
  11    8  0.30

ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87


Consensus pattern (10 bp):   
ATTTTTTTTT

Found at i:748 original size:11 final size:11

Alignment explanation


    Indices: 732--768  Score: 58
    Period size: 11  Copynumber: 3.5  Consensus size: 11

        722 CTGGTCGAAA

                       
        732 TTTTTTTTTA-
          1 TTTTTTTTTAT

                       
        742 TTTTTTTTTAT
          1 TTTTTTTTTAT

                   *   
        753 TTTTTTTATAT
          1 TTTTTTTTTAT

                 
        764 TTTTT
          1 TTTTT

        769 GATATAACTA


Statistics
Matches: 25,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  10   10  0.40
  11   15  0.60

ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89


Consensus pattern (11 bp):   
TTTTTTTTTAT

Found at i:773 original size:10 final size:10

Alignment explanation


    Indices: 734--773  Score: 55
    Period size: 10  Copynumber: 4.1  Consensus size: 10

        724 GGTCGAAATT

                     *
        734 TTTTTTTATT
          1 TTTTTTTATA

                      
        744 TTTTTTTAT-
          1 TTTTTTTATA

                      
        753 TTTTTTTATA
          1 TTTTTTTATA

                  *   
        763 TTTTTTGATA
          1 TTTTTTTATA

             
        773 T
          1 T

        774 AACTACTAGT


Statistics
Matches: 28,  Mismatches: 1, Indels: 2
        0.90            0.03        0.06

Matches are distributed among these distances:
   9    9  0.32
  10   19  0.68

ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82


Consensus pattern (10 bp):   
TTTTTTTATA
Done.