genome.fa.s7906.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007906.1 Corchorus capsularis cultivar CVL-1 contig07927, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48661

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
489--642	69	2.2	70	86	5	206	49	1	12	37	1.49
933--966	2	17.0	2	93	0	59	50	0	2	47	1.16
4599--4630	1	32.0	1	100	0	64	0	0	0	100	0.00
5699--5775	31	2.5	32	89	4	113	28	11	19	40	1.87
19249--19274	9	2.9	9	100	0	52	0	34	23	42	1.54
19730--19784	17	3.2	17	77	10	58	40	18	18	23	1.91
19856--19898	17	2.6	16	85	10	59	34	20	23	20	1.96
19718--19939	118	1.9	118	93	0	381	29	21	22	26	1.99
19933--20168	130	1.8	130	86	3	341	35	24	20	19	1.95
20668--20711	2	22.0	2	95	0	79	47	2	0	50	1.13
23716--23983	141	1.9	141	88	0	401	32	13	19	35	1.90
23883--24100	117	1.9	116	90	0	346	32	11	21	33	1.90
23726--24241	258	2.0	257	96	0	960	32	12	19	35	1.90
23985--24246	141	1.9	142	89	0	409	32	12	19	35	1.90
24962--25006	22	2.0	22	83	8	56	31	22	11	35	1.89
26591--26743	58	2.6	58	90	0	234	24	18	9	47	1.78
26730--26874	44	3.4	44	92	2	224	20	22	5	52	1.66
26893--26976	32	2.6	32	96	0	150	16	20	5	57	1.60
26848--27048	104	2.0	103	81	3	226	17	22	5	53	1.66
27114--27236	55	2.2	56	85	8	162	26	17	6	49	1.70
34950--35014	30	2.2	30	86	5	87	10	27	38	23	1.88
35005--35044	14	3.0	14	89	7	57	15	17	42	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35265--35343	42	1.9	42	82	7	99	30	8	22	37	1.85
35283--35346	21	3.0	21	84	4	85	32	9	17	40	1.81
37092--37346	128	2.0	128	99	0	503	23	12	19	44	1.85
38317--38350	16	2.1	16	88	0	50	67	17	5	8	1.37
38646--38703	19	2.9	20	84	5	73	39	12	17	31	1.86
39256--39312	16	3.6	15	81	9	60	43	31	15	8	1.78
40043--40091	24	2.0	24	100	0	98	48	8	8	34	1.62
41965--42020	23	2.3	25	87	9	80	42	16	7	33	1.75
42481--42505	2	12.5	2	100	0	50	52	0	0	48	1.00
44767--44797	3	10.3	3	100	0	62	32	0	0	67	0.91
46243--46268	13	2.0	13	100	0	52	15	15	23	46	1.83
47110--47135	2	13.0	2	100	0	52	50	0	0	50	1.00
47213--47240	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1

The End!