Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007907.1 Corchorus capsularis cultivar CVL-1 contig07928, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63923

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5060--5153
46
2.0
46
95
0
170
29
23
21
25
1.99
6520--6637
60
2.0
60
88
3
175
27
27
14
31
1.95
8404--8442
6
6.7
6
91
2
62
33
2
12
51
1.54
8722--8788
34
2.0
34
91
2
109
29
8
5
55
1.55
17202--17234
12
2.8
12
86
13
50
57
0
3
39
1.14
17305--17792
173
2.9
168
82
6
560
37
16
15
30
1.90
19475--19585
41
2.7
41
85
2
152
28
12
18
39
1.88
22019--22257
41
5.9
41
86
1
302
29
13
18
38
1.90
22019--22257
123
2.0
122
87
0
343
29
13
18
38
1.90
25219--25244
3
8.7
3
100
0
52
34
0
0
65
0.93
28565--28698
66
2.0
66
100
0
268
43
10
8
37
1.71
38468--38492
12
2.1
12
100
0
50
92
0
8
0
0.40
45459--45501
15
2.8
16
86
10
54
53
2
2
41
1.26
45720--45768
22
2.2
22
100
0
98
34
32
18
14
1.91
47307--48472
35
33.7
35
83
6
1247
33
19
10
37
1.86
47660--48208
16
31.2
19
65
17
184
32
20
10
36
1.86
49564--49861
135
2.2
134
87
1
418
27
24
27
20
1.99

Tables:   1

The End!