Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007908.1 Corchorus capsularis cultivar CVL-1 contig07929, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53369

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2568--3838
427
3.0
427
91
3
1989
27
16
18
38
1.92
5416--5982
282
2.0
284
96
0
1048
28
17
22
32
1.96
9568--9953
156
2.5
155
77
9
390
35
18
15
30
1.92
10663--10702
17
2.3
17
91
4
62
42
12
0
45
1.42
10955--11122
88
1.9
87
86
7
243
36
7
2
54
1.41
19130--19174
22
2.0
22
100
0
90
35
17
15
31
1.92
20273--20512
41
5.9
41
88
1
358
39
19
12
28
1.88
20273--20485
82
2.6
82
96
0
399
40
17
13
28
1.87
23109--23195
41
2.2
40
84
10
115
41
18
11
28
1.85
24941--25017
37
2.1
37
97
0
145
33
20
7
37
1.82
34673--34698
11
2.4
11
100
0
52
42
7
0
50
1.31
48275--48325
14
3.6
15
79
10
63
43
0
0
56
0.99
49112--49142
16
2.0
16
93
6
55
38
19
0
41
1.51
51530--51566
18
2.1
18
94
0
65
18
54
18
8
1.68
52889--52916
14
2.0
14
100
0
56
42
0
7
50
1.30

Tables:   1

The End!