Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007909.1 Corchorus capsularis cultivar CVL-1 contig07930, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4782
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26


Found at i:4585 original size:18 final size:19

Alignment explanation


    Indices: 4557--4600  Score: 58
    Period size: 20  Copynumber: 2.4  Consensus size: 19

       4547 TGAGGTTTCC

                               
       4557 AAAAA-AAAAG-TT-AAAA
          1 AAAAAGAAAAGTTTCAAAA

                                
       4573 AAAAGAGAAAAGTTTCAAAA
          1 AAAA-AGAAAAGTTTCAAAA

                    
       4593 AAAAAGAA
          1 AAAAAGAA

       4601 GAAAAAAGGG


Statistics
Matches: 24,  Mismatches: 0, Indels: 5
        0.83            0.00        0.17

Matches are distributed among these distances:
  16    4  0.17
  17    1  0.04
  18    5  0.21
  19    6  0.25
  20    8  0.33

ACGTcount: A:0.75, C:0.02, G:0.11, T:0.11


Consensus pattern (19 bp):   
AAAAAGAAAAGTTTCAAAA
Done.