genome.fa.s7910.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007910.1 Corchorus capsularis cultivar CVL-1 contig07931, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45010

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
884--975	35	2.6	35	87	5	123	29	16	21	32	1.95
929--1295	35	10.5	35	91	1	495	26	17	17	37	1.93
929--1295	139	2.6	140	86	1	513	26	17	17	37	1.93
932--1324	174	2.3	175	84	2	520	27	17	17	37	1.93
8959--9043	22	3.8	22	80	7	75	42	7	21	29	1.79
9055--9117	8	8.7	7	73	23	51	49	3	17	30	1.62
9033--9150	22	5.4	21	77	8	92	42	4	21	32	1.72
9055--9117	14	4.4	14	77	18	51	49	3	17	30	1.62
9084--9231	36	3.9	36	75	8	136	43	4	23	28	1.74
9062--9123	14	4.3	15	79	18	60	46	4	19	29	1.70
9150--9231	22	3.8	22	87	3	114	43	4	24	26	1.74
9172--9231	14	4.3	14	72	16	61	46	3	23	26	1.68
9082--9278	72	2.7	70	78	11	186	42	5	24	27	1.76
9135--9281	8	19.0	8	68	16	71	43	5	25	25	1.76
9089--9281	14	13.1	16	67	20	57	42	5	24	26	1.77
9305--9361	24	2.4	24	85	8	80	45	3	21	29	1.68
9353--9391	15	2.6	15	100	0	78	58	0	20	20	1.39
9384--9425	13	3.2	13	86	3	57	42	7	23	26	1.80
9396--9469	22	3.4	22	78	10	62	47	4	22	25	1.69
9413--9642	22	10.6	22	71	12	70	44	3	23	28	1.71
9478--9646	36	4.9	36	70	20	105	42	3	23	31	1.71
9501--9646	8	20.6	7	70	25	69	43	2	22	30	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9475--9591	28	4.1	28	75	16	98	41	4	23	30	1.74
9514--9646	14	9.4	14	75	15	114	44	2	22	30	1.65
9501--9619	58	2.1	58	90	3	188	43	3	21	31	1.69
9851--9958	52	2.1	53	94	1	191	26	18	26	27	1.98
9904--10087	70	2.6	70	92	0	287	29	16	27	26	1.97
10941--10987	16	2.9	16	85	14	62	4	19	0	76	0.95
10941--10982	8	5.2	8	77	11	50	2	19	0	78	0.86
10986--11184	105	1.9	103	90	3	319	32	16	8	43	1.77
11130--11173	20	2.2	20	84	8	54	43	11	6	38	1.67
11447--11493	12	3.9	12	88	0	76	27	8	14	48	1.73
11783--11846	28	2.2	29	83	10	78	37	17	7	37	1.79
18981--19164	93	2.0	93	96	0	341	28	8	17	45	1.77
21376--21566	53	3.7	53	76	5	228	24	26	15	34	1.95
21376--21566	102	1.9	102	89	0	301	24	26	15	34	1.95
24529--24565	19	1.9	19	88	0	56	45	8	18	27	1.77
25161--25209	25	2.0	25	100	0	98	34	16	12	36	1.86
29060--29090	2	15.5	2	100	0	62	48	0	0	51	1.00
29394--29449	29	2.0	28	86	6	78	33	16	7	42	1.75
31969--32020	7	7.1	7	77	16	52	48	0	3	48	1.20
31964--32005	20	2.2	19	91	4	66	45	0	2	52	1.13
31974--32020	13	3.8	12	75	13	51	46	0	4	48	1.21
33400--33445	22	2.0	23	87	8	67	43	13	17	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33959--34004	21	2.2	21	88	0	65	34	4	28	32	1.77
35294--35342	25	2.0	24	92	4	80	28	8	38	24	1.84
40826--40862	6	6.3	6	96	3	67	51	13	0	35	1.41
42206--42241	19	1.9	18	88	5	54	36	22	0	41	1.54
44566--44637	29	2.4	29	81	2	81	40	26	11	22	1.87

Tables:   1

The End!